View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14417_low_14 (Length: 240)
Name: NF14417_low_14
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 31719653 - 31719514
Alignment:
| Q |
1 |
atttgttgtgttcatttattgagctccaaatacaattaataataaattataatatcaaaataaatctgctgcagcaatgatttatatcaactgtcaggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31719653 |
atttgttgtgttcatttattgagctccaaatacaattaataataaattataatatcaaaataaatctgctgcagcaatgatttatatcaactgtcaggta |
31719554 |
T |
|
| Q |
101 |
taagaatgtaatcattttgaatcctattagaattagaatt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31719553 |
taagaatgtaatcattttgaatcctattagaattagaatt |
31719514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 31012327 - 31012387
Alignment:
| Q |
159 |
gagccactatggcttgaagatcaggcgtaaggtggtcttctaaggttattacaaccggata |
219 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31012327 |
gagccactttggcctgaagatcaggagtaaggtggtcttctaaggttattacaaccggata |
31012387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 31709001 - 31708941
Alignment:
| Q |
159 |
gagccactatggcttgaagatcaggcgtaaggtggtcttctaaggttattacaaccggata |
219 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31709001 |
gagccactttggcctgaagatcaggagtaagatggtcttctaaggttattacaaccggata |
31708941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 31719430 - 31719387
Alignment:
| Q |
179 |
tcaggcgtaaggtggtcttctaaggttattacaaccggatacac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31719430 |
tcaggcgtaaggtggtcttctaaggttattacaaccggatacac |
31719387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 35550792 - 35550736
Alignment:
| Q |
161 |
gccactatggcttgaagatcaggcgtaaggtggtcttctaaggttattacaaccgga |
217 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||||||||| |||||||||||||||| |
|
|
| T |
35550792 |
gccactttggcttgaagatctggagtaagatggtcttctagggttattacaaccgga |
35550736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University