View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_low_15 (Length: 237)
Name: NF14417_low_15
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 16950924 - 16951139
Alignment:
| Q |
18 |
gcaaggacaccaaaaaaccaaactacaaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16950924 |
gcaaggacaccaaaaaaccaaactacaaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttt |
16951023 |
T |
|
| Q |
118 |
tgatgaatgctttactaaaggatgaagccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16951024 |
tgatgaatgctttactaaaggatgaagccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctcta |
16951123 |
T |
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| Q |
218 |
tggctttgttgatgat |
233 |
Q |
| |
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|||||||||||||||| |
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| T |
16951124 |
tggctttgttgatgat |
16951139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 17021589 - 17021804
Alignment:
| Q |
18 |
gcaaggacaccaaaaaaccaaactacaaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021589 |
gcaaggacaccaaaaaaccaaactacaaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttt |
17021688 |
T |
|
| Q |
118 |
tgatgaatgctttactaaaggatgaagccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021689 |
tgatgaatgctttactaaaggatgaagccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctcta |
17021788 |
T |
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| Q |
218 |
tggctttgttgatgat |
233 |
Q |
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|||||||||||||||| |
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| T |
17021789 |
tggctttgttgatgat |
17021804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 53747642 - 53747685
Alignment:
| Q |
21 |
aggacaccaaaaaaccaaactacaaaacaaacatggcgtaagct |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53747642 |
aggacaccaaaaaaccaaactacaaaacaaacatggcgtaagct |
53747685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 42773351 - 42773396
Alignment:
| Q |
21 |
aggacaccaaaaaaccaaactacaaaacaaacatgg-cgtaagcta |
65 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
42773351 |
aggacaccaaaaaaccaaactacaaaacaaacatggtcgtaagcta |
42773396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 14185019 - 14185063
Alignment:
| Q |
21 |
aggacaccaaaaaaccaaactacaaaacaaacatggcgtaagcta |
65 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
14185019 |
aggacaccaaaaaaccaaacaacaaaacaaacatggcgtaagcta |
14185063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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