View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_low_17 (Length: 222)
Name: NF14417_low_17
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 8944115 - 8944318
Alignment:
| Q |
1 |
aggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgattgacaacagcaacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8944115 |
aggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgattaacaacagcaacaaaa |
8944214 |
T |
|
| Q |
101 |
gctagtgtagtgtagtgtctattgaagtagcatgtgccatgaccattagtttttcattgtttcaaccagctagtgttgatataaacttagctacattttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944215 |
gctagtgtagtgtagtgtctattgaagtagcatgtgccatgaccattagtttttcattgtttcaaccagctagtgttgatataaacttagctacattttg |
8944314 |
T |
|
| Q |
201 |
ctct |
204 |
Q |
| |
|
|||| |
|
|
| T |
8944315 |
ctct |
8944318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 51854880 - 51855083
Alignment:
| Q |
1 |
aggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgattgacaacagcaacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
51854880 |
aggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttggccatcaccaccaatttgattaacaacagcaacaaaa |
51854979 |
T |
|
| Q |
101 |
gctagtgtagtgtagtgtctattgaagtagcatgtgccatgaccattagtttttcattgtttcaaccagctagtgttgatataaacttagctacattttg |
200 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51854980 |
gctagtgtagggtagtgtctattgaagtagcatgtgccatgaccattagtttttcattttttcaaccagctagtgttgatataaacttagctacattttg |
51855079 |
T |
|
| Q |
201 |
ctct |
204 |
Q |
| |
|
|||| |
|
|
| T |
51855080 |
ctct |
51855083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26887544 - 26887341
Alignment:
| Q |
1 |
aggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgattgacaacagcaacaaaa |
100 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26887544 |
aggcatttagttcttgaaggttttttaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgattaacaacagcaacaaaa |
26887445 |
T |
|
| Q |
101 |
gctagtgtagtgtagtgtctattgaagtagcatgtgccatgaccattagtttttcattgtttcaaccagctagtgttgatataaacttagctacattttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26887444 |
gctagtgtagtgtagtgtctattgaagtagcatgcgccatgaccattagtttttcattgtttcaaccagctagtgttgatataaacttagctacattttg |
26887345 |
T |
|
| Q |
201 |
ctct |
204 |
Q |
| |
|
|||| |
|
|
| T |
26887344 |
ctct |
26887341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 21988858 - 21989053
Alignment:
| Q |
1 |
aggcatttagctcttgaagattttctaactatgaaaataaaattgaattggacaaatgacttagccatcaccaccaatttgattgacaacagcaacaaaa |
100 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||| |||||||||||| | |||||| ||||||||||||||||| ||||||| ||||||||||| ||| |
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|
| T |
21988858 |
aggcatttagctctcgatggttttctaactatgaaattaaaattgaattaggcaaatggcttagccatcaccaccagtttgattaacaacagcaactaaa |
21988957 |
T |
|
| Q |
101 |
gctagtgtagtgtagtgtctattgaagtagcatgtgccatgaccattagtttttcattgtttcaaccagctagtgttgatataaacttagctacattt |
198 |
Q |
| |
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| |||||| |||||||| ||||||||||| |||||| ||||| |||||||| | ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
21988958 |
gttagtgt--cgtagtgtccgctgaagtagcatatgccataaccatcagtttttcttagtttccaccagctagtgctgatataaacttagctacattt |
21989053 |
T |
|
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