View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_low_3 (Length: 502)
Name: NF14417_low_3
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 246 - 493
Target Start/End: Original strand, 21193383 - 21193630
Alignment:
| Q |
246 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193383 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
21193482 |
T |
|
| Q |
346 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacnnnnn |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193483 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacttttt |
21193582 |
T |
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| Q |
446 |
nnncttctcttttgaaactgtccatgttagtattgttagtagtattat |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193583 |
tttcttctcttttgaaactgtccatgttagtattgttagtagtattat |
21193630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 246 - 493
Target Start/End: Original strand, 27249156 - 27249403
Alignment:
| Q |
246 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249156 |
taagaactatggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttc |
27249255 |
T |
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| Q |
346 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacnnnnn |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249256 |
ttctatgtctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggtacttttt |
27249355 |
T |
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| Q |
446 |
nnncttctcttttgaaactgtccatgttagtattgttagtagtattat |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249356 |
tttcttctcttttgaaactgtccatgttagtattgttagtagtattat |
27249403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 21193140 - 21193344
Alignment:
| Q |
17 |
aaaaaccaatgatttcaaccacgtaatggtgatgcatattgtagaatgccaaacaagcatgaattatcatccacatgtc--gtgaagataggtgagctca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21193140 |
aaaaaccaatgatttcaaccacgtaatggtgatgcatattgcagaatgccaaacaagcatgaattatcatccacatgtcaagtgaagataggtgagctca |
21193239 |
T |
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| Q |
115 |
cactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagagattgttgtttgagataagattata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21193240 |
cactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagagattgttgtttgagataagattata |
21193339 |
T |
|
| Q |
215 |
gtgtt |
219 |
Q |
| |
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||||| |
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| T |
21193340 |
gtgtt |
21193344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 27248933 - 27249137
Alignment:
| Q |
17 |
aaaaaccaatgatttcaaccacgtaatggtgatgcatattgtagaatgccaaacaagcatgaattatcatccacatgtc--gtgaagataggtgagctca |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27248933 |
aaaaaccaatgatttcaaccacgtaatggtgatgcatattgcagaatgccaaacaagcatgaattatcatccacatgtcaagtgaagataggtgagctca |
27249032 |
T |
|
| Q |
115 |
cactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagagattgttgtttgagataagattata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27249033 |
cactagccgcaaatgagacatcacttgacaactataaatacagtgaaagcagttaatgtttttgtgtggtgaagagattgttgtttgagataagattata |
27249132 |
T |
|
| Q |
215 |
gtgtt |
219 |
Q |
| |
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||||| |
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| T |
27249133 |
gtgtt |
27249137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 254 - 439
Target Start/End: Original strand, 27261052 - 27261231
Alignment:
| Q |
254 |
atggcttctgcttcagcatcttgtttcaagtcatcccttgttcttgacaagtctgaatgggtgaagggacaaacactcctacgtcaaccttcttctatgt |
353 |
Q |
| |
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||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||| || |
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| T |
27261052 |
atggcatctgcatcagcatctctcttcaagtcatcaattgttcttgacaagtctgaatgggtgaagggccaaac---cctccgtcaa---tcttcggtgg |
27261145 |
T |
|
| Q |
354 |
ctgttgttagatgcaaccctactgctccatcaggtcttaccattagagctggttcctatgccgacgagctcgtcaagaccgcggta |
439 |
Q |
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| | ||| |||||||||| | ||||||||| |||| || || |||||||||||||||||| | |||||||| |||||||||||| |
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| T |
27261146 |
ccgctgtacgatgcaaccccgccgctccatcaagtctcactatcagagctggttcctatgccaatgagctcgttaagaccgcggta |
27261231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 27260857 - 27260940
Alignment:
| Q |
59 |
agaatgccaaacaagcatgaattatcatccacatgtc--gtgaagataggtgagctcacactagccgcaaatgagacatcactt |
140 |
Q |
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||||| ||||||||| | || |||||||||||||||| |||| ||||||| |||||| | |||| ||||||||||||||||| |
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| T |
27260857 |
agaataccaaacaagaaggagttatcatccacatgtcaagtgatgataggttagctcatagcagcctcaaatgagacatcactt |
27260940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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