View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_low_4 (Length: 498)
Name: NF14417_low_4
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 218 - 477
Target Start/End: Original strand, 1385505 - 1385767
Alignment:
| Q |
218 |
ttcaatgcagacaaatattcgaaacaagttcaatctaaaaataatgatagtaagaaccatacctcaatgctact---tctttacgaacagtataacgaan |
314 |
Q |
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| T |
1385505 |
ttcaacgcagacaaatattcgaaacaagttcaatctaaaaataatgttagtaagaaccatacctcaatgctactacttctttacgaacagtataacgaat |
1385604 |
T |
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| Q |
315 |
nnnnnngtcaaaatttcgttccttccgcttttcatgaaatctaatcaacgaagctaatctctgagggacactgaatttttctggcgtaccaataaatccc |
414 |
Q |
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| T |
1385605 |
ttttttgtcaaaatttcgttccttccgcttttcatgaaatctaatcaacgaagctaatctctgagggacgctaaatttttctggcgtaccaataaatccc |
1385704 |
T |
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| Q |
415 |
taataaaatgtttcatgagccagatatttgaccagcaaaaactatcaattaaactccaaccaa |
477 |
Q |
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| T |
1385705 |
taataaaatgtttcatgagccagatatttgaccagcaaaaactatcaatcaaactccaaccaa |
1385767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 1373000 - 1373156
Alignment:
| Q |
18 |
aaacaaaaagatagcaattgacatgaggaattaacacagttcccatttaccttgtttgccgacataagtccacaagcattgcagagggttcttggccctt |
117 |
Q |
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| T |
1373000 |
aaacaaaaggataacaattgacatgaataattaacatagttcccatttaccttatttgcccacataagtccacaagcattgcagagggttcttggccctt |
1373099 |
T |
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| Q |
118 |
caggtccacgccgcatcattggcgtgcacttctcactgatgccacaatgcctacaac |
174 |
Q |
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| T |
1373100 |
caggtccacgccgcatcattggcgtgcacttctcactgatgttacattgcctacaac |
1373156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 1384869 - 1384958
Alignment:
| Q |
78 |
gacataagtccacaagcattgcagagggttcttggcccttcaggtccacgccgcatcattggcgtgcacttctcactgatgccacaatgc |
167 |
Q |
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| T |
1384869 |
gacatgagtccacaagcattgcagagggttcttggcccttcaggtccacgccgcatcattggcgtgcacttctcactgatgccacaatgc |
1384958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 1385480 - 1385509
Alignment:
| Q |
171 |
caaccaaaagcatttacgaatataattcaa |
200 |
Q |
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| T |
1385480 |
caaccaaaagcatttacgaatataattcaa |
1385509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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