View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14417_low_5 (Length: 395)
Name: NF14417_low_5
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 50906685 - 50907060
Alignment:
| Q |
1 |
acctttgtgatgataggttctaaattattggtttcactcaaacacatcatttttgtgacatacaataagaagcgaatgtagataattgtcaacgttgttg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50906685 |
acctttgtgatgatag-ttctaaattattggtttcactcaaacacatcatttttgtgacatagaataagaagcgaatggagataattgtcaacgttgttg |
50906783 |
T |
|
| Q |
101 |
ctcgtatttcagccgagttggaaagggaaaggcagaagaatgtggagatcatggaaaaatatcgatgctcgaatctctaagggtgacaattatctttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50906784 |
ctcgtatttcagccgagttggaaagggaaaggcagaagaatgtggagatcatggaaaaatatcgatgctcgaatctctaagggtgacaattatctttctt |
50906883 |
T |
|
| Q |
201 |
attcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgacaactttatgctttatgcacaaactg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50906884 |
attcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgacaactttatgctttatgcacaaactg |
50906983 |
T |
|
| Q |
301 |
aacctttgagattcgtataattgaagtaatcacagatatctagtgccaagattgaaggacactagtctgctacactc |
377 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50906984 |
aacctttgagattcgtatagttgaagtaatcacagatatctagtgccaagattgaaggacactagtctgctacactc |
50907060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 189 - 363
Target Start/End: Original strand, 55174976 - 55175145
Alignment:
| Q |
189 |
attatctttcttattcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgacaactttatgcttt |
288 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||||||| ||| ||| |||| ||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
55174976 |
attatcttttttatttgtactttgcttaaataagtgttgacttgttt-atattcaataaaagctgacatctagagtgaaagaatgaca-----cagtttt |
55175069 |
T |
|
| Q |
289 |
atgcacaaactgaacctttgagattcgtataattgaagtaatcacagatatctagtg-ccaagattgaaggacact |
363 |
Q |
| |
|
||||| ||| |||||||||||||||| | |||| | |||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
55175070 |
atgcagaaagtgaacctttgagattcatgtaatcgtagtaatcacatatatctaatgaccaagattgaaggacact |
55175145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 55174815 - 55174937
Alignment:
| Q |
51 |
ttttgtgacatacaataagaagcgaatgtagataattgtcaacgttgttgctcgtatttcagccgagttggaaagggaaaggcagaagaatgtggagatc |
150 |
Q |
| |
|
|||||||| ||| || |||||| ||||| ||||||| ||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
55174815 |
ttttgtgatatagaacaagaagtgaatggagataat-gtcaacgatgtttctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctc |
55174913 |
T |
|
| Q |
151 |
atgg-aaaaatatcgatgctcgaa |
173 |
Q |
| |
|
|||| ||||||||| ||||||||| |
|
|
| T |
55174914 |
atggaaaaaatatctatgctcgaa |
55174937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 55178563 - 55178607
Alignment:
| Q |
115 |
gagttggaaagggaaaggcagaagaatgtggagatcatggaaaaa |
159 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||| ||||||||||| |
|
|
| T |
55178563 |
gagttggaaagggaaaggctgaaaaatgcggagctcatggaaaaa |
55178607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University