View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14417_low_8 (Length: 338)
Name: NF14417_low_8
Description: NF14417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14417_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 36 - 324
Target Start/End: Original strand, 24527275 - 24527562
Alignment:
| Q |
36 |
gcattgcttcttgtaattgtattttgtaccattgttgcattttgtgttatgggtagtgctcattaatatatctttttgggttattaaataaaaaatcaat |
135 |
Q |
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| T |
24527275 |
gcattgcttcttgtaattgtattttgtaccattgttgcattttgtgttatgggtagtgctcattaatatatctttttggtttattaaataaaaaatcaat |
24527374 |
T |
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| Q |
136 |
tttgattttnnnnnnnnnnccgatacaaatgaagatgacaaatctaaatggatggtataatttcgtcaacaaatgtgttatttagac-nnnnnnnntcga |
234 |
Q |
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|||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
24527375 |
tttgattt--caaaatataccgataaaaatgaagatgacagagttaaatggatggtataatttcgtcaacaaatgtgttatttagacaaaaaaaaatcaa |
24527472 |
T |
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| Q |
235 |
gaatgtataaagtacacttaatatgagtgtgtgcgcgacccaatgcaagagaaaaaacaattgacaacaaatgtgttaaatggatgatat |
324 |
Q |
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| T |
24527473 |
gaatgtataaagtacacttaatattagtgtgtgcgcaacccaatgcgagagaaaaaacaattgactacaaatgtgttaaatggatgatat |
24527562 |
T |
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