View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14418_high_10 (Length: 379)

Name: NF14418_high_10
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14418_high_10
NF14418_high_10
[»] chr2 (17 HSPs)
chr2 (17-363)||(31802934-31803280)
chr2 (16-324)||(30168711-30169019)
chr2 (32-298)||(30065750-30066016)
chr2 (32-298)||(30009253-30009519)
chr2 (16-294)||(30039881-30040159)
chr2 (16-294)||(30109359-30109637)
chr2 (16-294)||(30234019-30234297)
chr2 (16-294)||(30078942-30079220)
chr2 (16-294)||(30020536-30020814)
chr2 (16-294)||(30121058-30121336)
chr2 (16-298)||(30277062-30277344)
chr2 (26-294)||(30787816-30788084)
chr2 (16-294)||(30102829-30103107)
chr2 (21-295)||(30249465-30249739)
chr2 (26-294)||(30136085-30136353)
chr2 (26-296)||(30221279-30221549)
chr2 (107-324)||(30187033-30187250)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 31803280 - 31802934
Alignment:
Q  17 tgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcatc 116  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||| |    
T  31803280 tgtgattttagaagcaccacggtaagaaattcgttcaaattctccttctgctatgacttcggaaatatcttgaatcatctttgccatgttcctgctcaac 31803181  T
Q  117 tggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttgg 216  Q
     |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31803180 cggtgccttttgatcggattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttgg 31803081  T
Q  217 cagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcacactagctctttttccatcaag 316  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31803080 cagctttgttcagccaattgtggacaagattttcaattttttctccgttccttatagcctcatcaactgtgtgttgcacactagctctttttccatcaag 31802981  T
Q  317 cttttggagtccgagtgtcannnnnnngaagttgtcgttgtagttga 363  Q
     |||||||| |||||| |||        |||||||||||||||||||    
T  31802980 gttttggagcccgagtatcatttttttaaagttgtcgttgtagttga 31802934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 30169019 - 30168711
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||| |||| |||||||  |||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| || |  ||  |  ||||||||||||     
T  30169019 ctgtcacttgagaagcaagacggtaagaaattctgtcaaattttccttctgctaggacttcagaaatctcttgtattaagtttttggtcttcctgctcag 30168920  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  |||||||||| ||||||| |||||||| ||||| || |||||| |||| |  |||   ||||| ||||| ||||||||  || ||    
T  30168919 ctggtgccttgtgcacagattgggaaagtgtcctatagaacattgaacttttgcatggccttcagattcagtgagtttatttgcctcagcaaccatgatg 30168820  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcacactagctctttttccatcaa 315  Q
     |  ||||||||| ||| || |  |||| ||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| || |||| || |    
T  30168819 tccactttgttcatccagttctgaacaatattctcaatctcttctccgttgcttctagcctcatcaacagtgtgttgcacactagcttttgttccctcca 30168720  T
Q  316 gcttttgga 324  Q
    |||||||||    
T  30168719 gcttttgga 30168711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 30066016 - 30065750
Alignment:
Q  32 agcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcatctggtgccttgtgatc 131  Q
    |||||||||||| |||| |||||||| ||||||| |||||||||| ||||||| ||| ||||||||  | |||||| |||||| ||| ||||||||| ||    
T  30066016 agcacggtaagatattctgtcaaattttccttctactatgacttcagaaatcttttgtatcatctttttaatcttcttgctcagctgatgccttgtgctc 30065917  T
Q  132 agattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagctttgttcagcc 231  Q
    ||||||||| ||| || ||||||||  ||| |  | ||| |||||||  ||||||  ||||| ||||| || ||||  |||||| |  ||||| ||| ||    
T  30065916 agattgggaaagtttcgcatagaacgttgacctattgcaaggtcttcattgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctcatcc 30065817  T
Q  232 aattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcacact 298  Q
    |||| | ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  30065816 aattttggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacact 30065750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 30009519 - 30009253
Alignment:
Q  32 agcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcatctggtgccttgtgatc 131  Q
    |||||||||||| |||| |||||||| ||||||| |||||||||| ||||||| ||| ||||||||  | |||||| |||||| ||| |||||||||  |    
T  30009519 agcacggtaagatattctgtcaaattttccttctactatgacttcagaaatcttttgtatcatctttttaatcttcttgctcagctgatgccttgtgcgc 30009420  T
Q  132 agattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagctttgttcagcc 231  Q
    ||||||||| ||| || ||||||||  ||| |  | ||| |||||||  ||||||  ||||| ||||| || ||||  |||||| |  ||||| ||| ||    
T  30009419 agattgggaaagtttcgcatagaacgttgacctattgcaaggtcttcattgtcaattagtttatttgcctccgcaaaagtgttgtccactttgctcatcc 30009320  T
Q  232 aattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcacact 298  Q
    |||| | ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  30009319 aattttggacaacattttcaatctcttctccgttccttctagcctcatcaacagtgtgttgcacact 30009253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 30039881 - 30040159
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||||| || ||||||||||||||||||||||   |||||   ||||||||||| || ||| ||||||| ||| ||||||||  |||||||||| || |     
T  30039881 ctgtgatttgagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttag 30039980  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| |||||  ||||| || ||||| ||||||    
T  30039981 ctggtgccttgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttg 30040080  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
     |  || |||||| |||||| | ||||| ||||||||| ||||||||||||||| |  ||||||||||| |||||||||    
T  30040081 tccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgca 30040159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 30109359 - 30109637
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||||| || ||||||||||||||||||||||   |||||   ||||||||||| || ||| ||||||| ||| ||||||||  |||||||||| || |     
T  30109359 ctgtgatttgagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttag 30109458  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| |||||  ||||| || ||||| ||||||    
T  30109459 ctggtgccttgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttg 30109558  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
     |  || |||||| |||||| | ||||| ||||||||| ||||||||||||||| |  ||||||||||| |||||||||    
T  30109559 tccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgca 30109637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 30234019 - 30234297
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||||| || ||||||||||||||||||||||   |||||   ||||||||||| || ||| ||||||| ||| ||||||||  |||||||||| || |     
T  30234019 ctgtgatttgagaagcagcacggtaagaaattttatcaaaacttccttctgctacgagttcagaaatcttttgcatcatctttatcatcttcctacttag 30234118  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| |||||  ||||| || ||||| ||||||    
T  30234119 ctggtgccttgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttg 30234218  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
     |  || |||||| |||||| | ||||| ||||||||| ||||||||||||||| |  ||||||||||| |||||||||    
T  30234219 tccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctgacctcatcaacattgtgttgca 30234297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 30079220 - 30078942
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||||| || ||||||||| ||||||||||||   |||||   ||||||||||| || ||| ||||||  ||| ||||||||  |||||||||| || |     
T  30079220 ctgtgatttgagaagcagcgcggtaagaaattttatcaaaacttccttctgctacgatttcagaaatcgtttgcatcatctttatcatcttcctacttag 30079121  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| |||||  ||||| || ||||| ||||||    
T  30079120 ctggtgccttgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataagttcatttgcctccgcaacagtgttg 30079021  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
     |  || |||||| |||||| | ||||| ||||||||| ||||||||||||||| | |||||||||||| |||||||||    
T  30079020 tccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgca 30078942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 30020814 - 30020536
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||||| || ||||||||||||||| ||||||   |||||   || |||||||| || ||| ||||||  ||| ||||| || ||||||||||| || |     
T  30020814 ctgtgatttgagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttag 30020715  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| || ||  |||||||| ||||| ||||||    
T  30020714 ctggtgccttgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttg 30020615  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
     |  || |||||| |||||| | ||||| ||||||||| ||||||||||||||| | |||||||||||| |||||||||    
T  30020614 tccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgca 30020536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 30121058 - 30121336
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||||| || ||||||||||||||| ||||||   |||||   || |||||||| || ||| ||||||  ||| ||||| || ||||||||||| || |     
T  30121058 ctgtgatttgagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttag 30121157  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| || ||  |||||||| ||||| ||||||    
T  30121158 ctggtgccttgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttg 30121257  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
     |  || |||||| |||||| | ||||| ||||||||| ||||||||||||||| | |||||||||||| |||||||||    
T  30121258 tccactgtgttcaaccaattctggacaatattttcaatctcttctccgttccttctggcctcatcaacattgtgttgca 30121336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 30277344 - 30277062
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    ||||||||| ||||||||  |||||||||||||  ||||||| ||||||| ||| ||| || ||||||||||| ||   |||  |  ||||| |||| |     
T  30277344 ctgtgacttgagaagcagtgcggtaagaaattctctcaaattttccttcttctaggacatcagaaatctcttgtattgcctttttggtcttcttgctaag 30277245  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
     ||||||||||||  |||||| ||  |||||||||| ||||| ||| | || |||||| |||| ||||||| |||||| || || ||||||| ||||| |    
T  30277244 ttggtgccttgtgtacagattagggaagtgtcccatggaacattgagcttttgcatggccttctgtgtcaataagtttcttggcctcagcaatggtgtag 30277145  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcacact 298  Q
        ||||||||||||| || | ||| | ||||||||| |||||||| |||| | ||||||||||||||||||||||||||||    
T  30277144 tttactttgttcagccagttctggacgatattttcaatctcttctccattccgtctagcctcatcaacagtgtgttgcacact 30277062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 26 - 294
Target Start/End: Complemental strand, 30788084 - 30787816
Alignment:
Q  26 agaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcatctggtgcctt 125  Q
    ||||||||||||||||||||||  ||  |||| ||||||||| | |||||| |||||||||||   ||||||  |  |||||||||| |  || ||||||    
T  30788084 agaagcagcacggtaagaaattttgtagaattttccttctgccaggacttcagaaatctcttgtgacatctttttgttcttcctgcttagttgatgcctt 30787985  T
Q  126 gtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagctttgt 225  Q
    ||   ||||||||||||||||| ||||||||||||| | || |||||  |||| |  |||| |||||| || || | | |||  |||||| |  ||||||    
T  30787984 gtacacagattgggacagtgtctcatagaacactgagcttttgcatgaccttcagactcaataagtttcttagccttaccaagagtgttgtccactttgt 30787885  T
Q  226 tcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
    |||||||||| | ||||| ||||||||| ||||||||||||||| |||||| ||| || ||||||||||    
T  30787884 tcagccaattttggacaatattttcaatctcttctccgttccttctagccttatccacggtgtgttgca 30787816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 30102829 - 30103107
Alignment:
Q  16 ctgtgactttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcat 115  Q
    |||||| || ||||||||||||||| ||||||   |||||   || |||||||| || ||| ||||||  ||| ||||| || ||||||||||| || |     
T  30102829 ctgtgatttgagaagcagcacggtatgaaattttatcaaaacttctttctgctacgagttcagaaatcgtttgcatcatgtttgtcatcttcctacttag 30102928  T
Q  116 ctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttg 215  Q
    |||||||||||||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| || ||  |||||||||||||| ||| ||    
T  30102929 ctggtgccttgtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataaattcatttgcatcagcaacagtgatg 30103028  T
Q  216 gcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
     |  || |||||| |||||| | ||||| ||||||||| ||||| ||||||||| | |||||||||||| |||||||||    
T  30103029 tccactgtgttcaaccaattctggacaatattttcaatctcttcaccgttccttctggcctcatcaacattgtgttgca 30103107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 30249739 - 30249465
Alignment:
Q  21 actttagaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcatctggt 120  Q
    |||| |||||||| |||||||||||||  |||||||| ||||| ||| | |||||| |||||||||||   ||||||  |  |||||||||| |  || |    
T  30249739 acttgagaagcagaacggtaagaaattttgtcaaattttccttgtgcgaggacttcagaaatctcttgtgacatctttttgttcttcctgcttagttgat 30249640  T
Q  121 gccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagc 220  Q
    |||||||   ||||||||||||||||| ||||||||||||| | || |||||  |||| |  |||| |||||| || || | | |||  ||| || | ||    
T  30249639 gccttgtacacagattgggacagtgtctcatagaacactgagcttttgcatgaccttcagactcaataagtttcttagccttaccaagagtgctgtccgc 30249540  T
Q  221 tttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcac 295  Q
    |||||||||||| || |  |||| ||||||||| ||||  ||||||||| ||||||||||||| |||||||||||    
T  30249539 tttgttcagccagttctgcacaatattttcaatctcttgcccgttccttctagcctcatcaacggtgtgttgcac 30249465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 294
Target Start/End: Original strand, 30136085 - 30136353
Alignment:
Q  26 agaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcatctggtgcctt 125  Q
    ||||||||||||||| ||||||   |||||   ||||| ||||| || ||| ||||||  ||| ||||||||  |||||||| | || | ||||||||||    
T  30136085 agaagcagcacggtaggaaattttatcaaaacttccttttgctacgatttcagaaatcgtttgcatcatctttatcatcttcttacttagctggtgcctt 30136184  T
Q  126 gtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagctttgt 225  Q
    |||  || ||||||| | |||| ||||||||| ||| | || |||||| ||||  |||||| || ||  |||||||| ||||| |||||| |  || |||    
T  30136185 gtgcacaaattgggaaaatgtctcatagaacattgagcttttgcatggccttcactgtcaataatttcatttgcatctgcaacagtgttgtccactgtgt 30136284  T
Q  226 tcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgca 294  Q
    ||| |||||| | ||||| ||||||||| ||||| ||||||||| | |||||||||||| |||||||||    
T  30136285 tcaaccaattctggacaatattttcaatctcttccccgttccttctggcctcatcaacattgtgttgca 30136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 30221549 - 30221279
Alignment:
Q  26 agaagcagcacggtaagaaattcggtcaaattctccttctgctatgacttcggaaatctcttgaatcatcttcgtcatcttcctgctcatctggtgcctt 125  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| |  ||||| |||||||| || ||||||||  |  | ||||| ||||  || ||||||    
T  30221549 agaagaagcacggtaagaaattctgtcaaattttccttctgcgagaacttcagaaatctcatgtatcatctttttgcttttcctactcagttgatgcctt 30221450  T
Q  126 gtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagcaacggtgttggcagctttgt 225  Q
    |||  |||||||||| | | || ||||||||| |||   ||  ||||| | |  ||||||| |||||| ||||| |||||||| |||||| |  |    |    
T  30221449 gtgcacagattgggaaaatatctcatagaacattgagatttttcatggccctgagtgtcaataagtttctttgcctcagcaacagtgttgtccacaccat 30221350  T
Q  226 tcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcaca 296  Q
    ||||||| ||   ||||| ||||||||| ||||||||||||||| |||||||||||||| |||| ||||||    
T  30221349 tcagccacttcaggacaatattttcaatctcttctccgttccttctagcctcatcaacactgtgctgcaca 30221279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 30187033 - 30187250
Alignment:
Q  107 cctgctcatctggtgccttgtgatcagattgggacagtgtcccatagaacactgaaccttcgcatggtcttcggtgtcaagaagtttgtttgcatcagca 206  Q
    ||||||||  ||||||||||||  ||||||||||  ||| |||||||| |||||| | || |||||| ||||  |||||| |||||| ||||| ||||||    
T  30187033 cctgctcagttggtgccttgtgcacagattgggaaggtggcccatagagcactgagcttttgcatggccttcactgtcaataagtttctttgcctcagca 30187132  T
Q  207 acggtgttggcagctttgttcagccaattgtagacaagattttcaatttcttctccgttccttatagcctcatcaacagtgtgttgcacactagctcttt 306  Q
    ||  ||||| |  |  |||||||||| |  | |||||  |||||||| |||||||| ||  || ||||||| |||||  || ||||||||||| || ||     
T  30187133 accatgttgtccacactgttcagccagtcctggacaaacttttcaatctcttctccattatttctagcctcgtcaactttgcgttgcacactatcttttg 30187232  T
Q  307 ttccatcaagcttttgga 324  Q
    |||| || ||||||||||    
T  30187233 ttccttctagcttttgga 30187250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University