View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_high_13 (Length: 345)
Name: NF14418_high_13
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_high_13 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 9751875 - 9751558
Alignment:
| Q |
9 |
agataatacttattgatgaccaacatgtttctttttctttgattgataatggtaaggagtttgcaatggttgcagtctatgcatcaacttgttacttgaa |
108 |
Q |
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| T |
9751875 |
agataatacttattgatgaccaacatgtttctttttctttgattgataatggtaaggagtttgcaatggttgcagtctatgcatcaacttgttacttgaa |
9751776 |
T |
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| Q |
109 |
gagaaggcgtctgtgggaaacactaggtaatatgttgactcaatttaaccttccatggaacttttttggtgacttaaacactatacttaggagctgtgaa |
208 |
Q |
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| T |
9751775 |
gagaaggcgtctgtgggaaacactaggtaatatgttgactcaatttaaccttccatggaacttttttggtgacttaagcactatacttaggagctgtgaa |
9751676 |
T |
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| Q |
209 |
catcagggcacccattctccctctagaactcatatgaatgactttcaaatctggaaaaatgattatgatctgccgctaagaattcattttttcttgttgg |
308 |
Q |
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| T |
9751675 |
catcagggcacccattctccctctagaactcatatgaatgactttcaaatctggacaaatgattatgatctgccgctaagaattcattttttcttgttgg |
9751576 |
T |
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| Q |
309 |
caaactagagtagtatgt |
326 |
Q |
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| T |
9751575 |
caaactagagtagtatgt |
9751558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 3566149 - 3566120
Alignment:
| Q |
86 |
tatgcatcaacttgttacttgaagagaagg |
115 |
Q |
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| T |
3566149 |
tatgcatcaacttgttacttgaagagaagg |
3566120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 140293 - 140198
Alignment:
| Q |
20 |
attgatgaccaacatgtttctttttctttgattgataatggtaaggagtttgcaatggttgcagtctatgcatcaacttgttacttgaagagaagg |
115 |
Q |
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| T |
140293 |
attgatgatcaacatgtttccttctctatctctgataacggtaaggagctagcattggcagcaatatatgcatcaacttgttacttgaagagaagg |
140198 |
T |
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