View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_high_16 (Length: 310)
Name: NF14418_high_16
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 107 - 297
Target Start/End: Complemental strand, 7413297 - 7413107
Alignment:
| Q |
107 |
aaacaaaagaacactcccaagggtaaaaataaattacctatctaatcatacaatctaaaggatttccataccactcgtaaagcaaataaggtaggatgta |
206 |
Q |
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| T |
7413297 |
aaacaaaaaaacactcccaagggtaaaaataaattacctatcttatcatacaatctaaaggatttccataccactcgtaaagcaaataagataggatgta |
7413198 |
T |
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| Q |
207 |
aaatgatttaattttcttaacaaagaaagttaaatccttttacaccctacaaattgactataaagtcgtatgtcaaaccaacaacaatcct |
297 |
Q |
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| T |
7413197 |
aaatgatttaattttcttagcaaagaaggttaaatctttttacaccctacaaattaactataaagttgtatgtcaaaccaacaacaatcct |
7413107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 7413429 - 7413321
Alignment:
| Q |
5 |
gtttctttacaaaaatgtattta-nnnnnnnaaaaaattgaatggaaaatagtcaatatattcttaataatagaaaaaaggtacatggtagtatctgacc |
103 |
Q |
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| T |
7413429 |
gtttctttacaaaaatgtatttatttttaaaaaaaaattgaatggaaaatagtcaatatattcttaataatagaaaaaaggtatatagtagtatctgacc |
7413330 |
T |
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| Q |
104 |
taaaaacaa |
112 |
Q |
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| T |
7413329 |
taaaaacaa |
7413321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 7413084 - 7413026
Alignment:
| Q |
235 |
gttaaatccttttacaccctacaaattgactataaagtcgtatgtcaaaccaacaacaa |
293 |
Q |
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| T |
7413084 |
gttaaatccatttacaccctacaaattgactataaagtcgtatgccaaaccagcaacaa |
7413026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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