View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14418_high_17 (Length: 308)
Name: NF14418_high_17
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 44397144 - 44397408
Alignment:
| Q |
17 |
agaagcttaataaggaagaagatggtgatagaagtaatggatcatcaacatcatcatctatgtcggtttctgatgttatgtctcttcaaaatgatcatgg |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44397144 |
agaaacttaataaggaagaagatggtgatataagtaatgggtcatca---tcatcatctatgtcggtttctgatgttatgtctcttcaaaatgatcatgg |
44397240 |
T |
|
| Q |
117 |
tgaaacaccactttacatagctgcacacaataatctgaaggaagttttcacctttttgattaaattatgtgactttgaggttctcaagattcgttctaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44397241 |
tgaaacaccactttacatagctgcacacaataatctgaaggaagttttcacctttttgattaaattatgtgactttgaggttctcaagattcgttctaag |
44397340 |
T |
|
| Q |
217 |
tctgatatgaacgcttttcatgttgcagctaagcgtggccatcttggtattctacttattcacttttc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44397341 |
tctgatatgaacgcttttcatgttgcagctaagcgtggccatcttggtattctacttattcacttttc |
44397408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 258
Target Start/End: Original strand, 11357935 - 11357982
Alignment:
| Q |
211 |
tctaagtctgatatgaacgcttttcatgttgcagctaagcgtggccat |
258 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
11357935 |
tctaaatctgatatgaatgcatttcacgttgcagctaagcgtggccat |
11357982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University