View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14418_high_18 (Length: 293)

Name: NF14418_high_18
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14418_high_18
NF14418_high_18
[»] chr1 (2 HSPs)
chr1 (3-219)||(11405137-11405353)
chr1 (111-189)||(2733503-2733581)
[»] scaffold0330 (1 HSPs)
scaffold0330 (83-218)||(14145-14277)
[»] chr7 (3 HSPs)
chr7 (92-218)||(22952756-22952881)
chr7 (83-212)||(30057927-30058055)
chr7 (69-126)||(23313255-23313312)
[»] scaffold1657 (1 HSPs)
scaffold1657 (83-215)||(240-372)
[»] chr8 (3 HSPs)
chr8 (79-131)||(3604672-3604724)
chr8 (79-128)||(587621-587670)
chr8 (79-128)||(626252-626301)
[»] chr6 (6 HSPs)
chr6 (69-128)||(20189181-20189240)
chr6 (69-128)||(22146751-22146810)
chr6 (79-122)||(28961026-28961069)
chr6 (79-128)||(9313547-9313596)
chr6 (87-128)||(16883867-16883908)
chr6 (83-128)||(28118141-28118186)
[»] chr5 (1 HSPs)
chr5 (83-128)||(18239282-18239327)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 11405137 - 11405353
Alignment:
Q  3 tctaatacaagtaatattaagattatttgattttagactctcaagacagctctctgtacatgtatgtgattgactattaacaagtatattaaaaatgtat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||    
T  11405137 tctaatacaagtaatattaagattatttgattttagactctcaaaacagctatctttacatgtatgtgattgactattgacaaatatattaaaaatgtat 11405236  T
Q  103 cgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaatttaacaaatatggggtatttag 202  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11405237 cgaaatattaaaattaataacttcgtctctgtagggattattttaatcttaacttgacaaattaattataataaaaatttaacaaatatggggtatttag 11405336  T
Q  203 tgcatatatttgagttc 219  Q
    |||||||||||||||||    
T  11405337 tgcatatatttgagttc 11405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 2733503 - 2733581
Alignment:
Q  111 taaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaatttaacaaat 189  Q
    |||||||||||||||||||||    | |||||||| ||||| ||||||| || |||||||||||||| |||||||||||    
T  2733503 taaaatttataagttcgtctccacagtgattatttcaatctcaacttgaaaatttaattataataaggatttaacaaat 2733581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 14277 - 14145
Alignment:
Q  83 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaattt 182  Q
    |||||||| ||||||||||||||| || ||| ||||||||||| ||||| |   ||||| ||||||||| ||| |   || |||||||||||||| ||||    
T  14277 caagtatactaaaaatgtatcgaagtaataagatttataagtttgtctccgcatggattgttttaatctcaacgtagaaatttaattataataag-attt 14179  T
Q  183 aacaaatatggggtatttagtgcatatatttgagtt 218  Q
    |||||  ||||||||| ||| |||||||||| ||||    
T  14178 aacaa--atggggtatgtagagcatatatttcagtt 14145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 218
Target Start/End: Complemental strand, 22952881 - 22952756
Alignment:
Q  92 taaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaatttaacaaatat 191  Q
    |||||||| |||||| || ||||||||||||||| | |||     ||||| ||| ||||| |||||||||| |||||||||||||| ||||||||||| |    
T  22952881 taaaaatgcatcgaagtaataaaatttataagtttgcctccacatggattgtttcaatctaaacttgacaatttaattataataaggatttaacaaat-t 22952783  T
Q  192 ggggtatttagtgcatatatttgagtt 218  Q
     ||||||  |  |||||||||||||||    
T  22952782 agggtatgcaaagcatatatttgagtt 22952756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 30057927 - 30058055
Alignment:
Q  83 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaattt 182  Q
    ||||| ||||||||||| |||||| || |||| |||||||| |||| ||  |  ||||| ||| ||||| |||| ||||| ||||||||||| || ||||    
T  30057927 caagtgtattaaaaatgcatcgaagtagtaaa-tttataagatcgtttccatgaggattgtttcaatctcaactcgacaatttaattataattaggattt 30058025  T
Q  183 aacaaatatggggtatttagtgcatatatt 212  Q
    ||||||||  |||||| ||| |||||||||    
T  30058026 aacaaataacgggtatgtagagcatatatt 30058055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 23313255 - 23313312
Alignment:
Q  69 tgattgactattaacaagtatattaaaaatgtatcgaaatattaaaatttataagttc 126  Q
    |||| |||| ||| ||||| || ||||||| |||||||||| ||||||||||||||||    
T  23313255 tgatagacttttagcaagtgtactaaaaatatatcgaaataataaaatttataagttc 23313312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 240 - 372
Alignment:
Q  83 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctctgttgggattattttaatcttaacttgacaaattaattataataagaattt 182  Q
    ||||| ||||||||||| |||||| || |||||||||||||||||||||      |||| ||| ||||| |||| |  || |||||||||||||| ||||    
T  240 caagtgtattaaaaatgcatcgaagtaataaaatttataagttcgtctccacaaagattgtttcaatctcaactcggtaatttaattataataaggattt 339  T
Q  183 aacaaatatggggtatttagtgcatatatttga 215  Q
    || |||||  |||||| ||| | ||||||||||    
T  340 aaaaaatagcgggtatgtagaggatatatttga 372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 3604672 - 3604724
Alignment:
Q  79 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgtctc 131  Q
    ||||||||| || |||||||| ||||||||| |||||||||||||||| ||||    
T  3604672 ttaacaagtttactaaaaatgcatcgaaataataaaatttataagttcatctc 3604724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 587670 - 587621
Alignment:
Q  79 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||    
T  587670 ttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgt 587621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 626252 - 626301
Alignment:
Q  79 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    ||||||||| |||||||||| || |||| || ||||||||||||||||||    
T  626252 ttaacaagtgtattaaaaatataacgaagtaataaaatttataagttcgt 626301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 20189181 - 20189240
Alignment:
Q  69 tgattgactattaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    |||| |||| ||| ||||| |||||||||| ||||||| || ||||||||||||||||||    
T  20189181 tgatagacttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgt 20189240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 22146810 - 22146751
Alignment:
Q  69 tgattgactattaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    |||| |||| ||| ||||| |||||||||| ||||||| || ||||||||||||||||||    
T  22146810 tgatagacttttagcaagtgtattaaaaatatatcgaagtaataaaatttataagttcgt 22146751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 28961069 - 28961026
Alignment:
Q  79 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataa 122  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||    
T  28961069 ttaacaagtatactaaaattgtatcgaaataataaaatttataa 28961026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 9313547 - 9313596
Alignment:
Q  79 ttaacaagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    ||||||||| || ||||||| ||||||| || ||||||||||||||||||    
T  9313547 ttaacaagtgtactaaaaatatatcgaagtaataaaatttataagttcgt 9313596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 16883908 - 16883867
Alignment:
Q  87 tatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    |||||||||||| ||||||| || ||||||||||||||||||    
T  16883908 tatattaaaaatatatcgaagtaataaaatttataagttcgt 16883867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 28118186 - 28118141
Alignment:
Q  83 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    ||||| |||||||||| ||||||| || ||||||||||||||||||    
T  28118186 caagtgtattaaaaatatatcgaagtaataaaatttataagttcgt 28118141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 18239282 - 18239327
Alignment:
Q  83 caagtatattaaaaatgtatcgaaatattaaaatttataagttcgt 128  Q
    ||||| ||||||||||| |||||| || ||||||||||||||||||    
T  18239282 caagtgtattaaaaatgaatcgaagtaataaaatttataagttcgt 18239327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University