View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_high_6 (Length: 463)
Name: NF14418_high_6
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 1841398 - 1840963
Alignment:
| Q |
11 |
gagtgagatgaaaataaatcaacaaaatagagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggag |
110 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1841398 |
gagtgaaatgaaaataaatcaacaaaatggagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggag |
1841299 |
T |
|
| Q |
111 |
ttgtctgagaaattcattgcactttcagccactattcccggcttgagcaaggtaaatttgtcactagtttcatcgggtccattattcgtataacatattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
1841298 |
ttgtctgagaaattcattgcactttcagccactattcccggcttgagcaaggtaaatttgtcactagtttcatcggatccattattcgtataatatattt |
1841199 |
T |
|
| Q |
211 |
tgatcatatttttctaaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1841198 |
tgatcatatttttctaaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacg |
1841099 |
T |
|
| Q |
311 |
tgttgatgagctcgagaaacaagacaaaaatgttggtgtcacgccggtgatggttctccggaaaccttattcatttggaaacaataattacaatcaagac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
1841098 |
tgttgatgagctcgagaaacaagacaaaaatgttggtgtcacgccggtgatggttctccggaaaccttattcatgtggaaacaataattacaatgaagac |
1840999 |
T |
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| Q |
411 |
acgaattcgagtgaaacaagttgtgatggtgattgt |
446 |
Q |
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| T |
1840998 |
acgaattcgagtgaaacaagttgtgatggtgattgt |
1840963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 1820920 - 1820750
Alignment:
| Q |
225 |
taaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacgtgttgatgagctcg |
324 |
Q |
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|||||||||| ||||| | |||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
1820920 |
taaaattttacgattccttctttatagatggacaaggcttcattacttcgagaagcgattgattatgtgaaacaacttaaagaacatgttgaagagctcg |
1820821 |
T |
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| Q |
325 |
agaaacaagacaaaaatgttggtgtcacgccggtgatggttctccggaaaccttattcatttggaaacaat |
395 |
Q |
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| T |
1820820 |
agaaacaagacaaaaatgttggtgtcacgccggtgatggttctccgacaaccttattcatgtggaatcaat |
1820750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 1824048 - 1823912
Alignment:
| Q |
40 |
gagtgaagagaggtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattgcactttcagc |
139 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| || |||||||| ||||||||||||||||| || |
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| T |
1824048 |
gagtgaagaaaggtagaagcagttcacaatgtattgatcatataatggcagagagaaaaaggagacaagaattgtctgaaaaattcattgcactttcggc |
1823949 |
T |
|
| Q |
140 |
cactattcccggcttgagcaaggtaaatttgtcacta |
176 |
Q |
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|||||||| || ||||||||||||||||||| |||| |
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| T |
1823948 |
tactattcctggattgagcaaggtaaatttgtaacta |
1823912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 4701153 - 4701117
Alignment:
| Q |
190 |
cattattcgtataacatattttgatcatatttttcta |
226 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||| |
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| T |
4701153 |
cattattcatataacatgttttgatcatatttttcta |
4701117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 53801036 - 53801064
Alignment:
| Q |
199 |
tataacatattttgatcatatttttctaa |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
53801036 |
tataacatattttgatcatatttttctaa |
53801064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 12514363 - 12514399
Alignment:
| Q |
190 |
cattattcgtataacatattttgatcatatttttcta |
226 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||| |
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| T |
12514363 |
cattattcatataacatattttaatcatatttttcta |
12514399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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