View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_low_1 (Length: 718)
Name: NF14418_low_1
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 99 - 304
Target Start/End: Complemental strand, 33422187 - 33421979
Alignment:
| Q |
99 |
aaatttcactcatatatacaattctctgaaaacaaatcagaagatagttagaactttgatcacac--tacacatttacagtgatgtgaaatcctccacgg |
196 |
Q |
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| T |
33422187 |
aaatttcactcagatatacaattctccgaaaacaaatgagaagatggttaaaactttgatcacaaattgcaaatttacaaagatgcaaaatcctgatcta |
33422088 |
T |
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| Q |
197 |
caaaa--catgcaaacgagatgataaatgcatcaaaaaattgaaaaccataaatggcagcccagtgcgccaagctgccatcaattgcagtctgagaaagg |
294 |
Q |
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| T |
33422087 |
aaaaaagcatgcaaaccagatgataaatgcatccaaaaattgaaaaacataaatg-cagctcagtgcgccaagctctcattaattgcagtctgagaaagg |
33421989 |
T |
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| Q |
295 |
tagatgtaca |
304 |
Q |
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|||||||||| |
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| T |
33421988 |
tagatgtaca |
33421979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 472 - 599
Target Start/End: Complemental strand, 33421833 - 33421706
Alignment:
| Q |
472 |
tcagagttctggttcttgtttcttcggctgggagtcacc--aaaagctataccattttagcaggcttattgaaacgaagcaaacaaatacacaacaaaat |
569 |
Q |
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| T |
33421833 |
tcagagttctggttcttgtttctttggctgggagtcaccaaaaaagctataccatttta-caggcttattgaaaaaaagcaaacaaatacacagtaagat |
33421735 |
T |
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| Q |
570 |
attgatcaaaggaatgtgaaaagtaacagc |
599 |
Q |
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| T |
33421734 |
attggtcaaagg-atgtgaaaagtaacagc |
33421706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 641 - 701
Target Start/End: Complemental strand, 33858441 - 33858381
Alignment:
| Q |
641 |
actgatagctaatatctaccctccccaagaaaacaaggaactcccctctgaagatggtatt |
701 |
Q |
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| T |
33858441 |
actgatagctaatatctaccctccccaagaaaacaaggaactcccctctgaagatggtatt |
33858381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 33422304 - 33422255
Alignment:
| Q |
7 |
ggagcacagaattcgatcaacacaggagtctcagattctaagacaaggga |
56 |
Q |
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| T |
33422304 |
ggagcccagaattcgaccaacacaggagtctcagattctatgacaaggga |
33422255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 701
Target Start/End: Complemental strand, 33421509 - 33421453
Alignment:
| Q |
645 |
atagctaatatctaccctccccaagaaaacaaggaactcccctctgaagatggtatt |
701 |
Q |
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| T |
33421509 |
atagctaaaatctaccctccacaagaagacaaagagctcccctctgaagatggtatt |
33421453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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