View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_low_10 (Length: 383)
Name: NF14418_low_10
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 212 - 365
Target Start/End: Complemental strand, 4901334 - 4901181
Alignment:
| Q |
212 |
caaatggtgtacctgtatttctgttgtaactagacataggatggtaagaagcagcataagacaatgcagcattttgggtagttttgtcaactaaaaaaga |
311 |
Q |
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| T |
4901334 |
caaatggtgtacctgtatttctgttgtaactagacataggatggtaagaagcagcataagacaatgcagcattttgggtagttttgtcaactaaaaaaga |
4901235 |
T |
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| Q |
312 |
ttcagattttgaagttggagttgaaaaactaagcatttgttgttgttggtgttg |
365 |
Q |
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| T |
4901234 |
ttcagattttgaagttggagttgaaaaactaagcatttgttgttgttggtgttg |
4901181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 4901526 - 4901455
Alignment:
| Q |
10 |
aatatatttccatgaaaagaccctccaacagtactgtagaatcataccttataactataacaaccttataaa |
81 |
Q |
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| T |
4901526 |
aatatatttccatgaaaagaccctccaacagtactgtagaatcataccttataactataacaaccttataaa |
4901455 |
T |
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