View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_low_15 (Length: 328)
Name: NF14418_low_15
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 29765555 - 29765826
Alignment:
| Q |
16 |
aatatctacatgtatttaccatgagtaaaccatcattttgggtatgaaattgtaagtgtatgataatttgggacttcaaatatacaaaatattaagttgc |
115 |
Q |
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| T |
29765555 |
aataactacatgtatttaccatgagtaaaccaccattttgggtatggaattgtaagtgtatgataatttgggacttcaaatatacaaaatatcaagttgc |
29765654 |
T |
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| Q |
116 |
gcccttagagtctttaatgtgagtcaaaatgctcacttaatcaagtaattatgtttgaagtgatactgtgtcacgttatgtgacaacttaatttattcct |
215 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||| |
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| T |
29765655 |
--ccttag--tctttaatgtgagtcaaaatgctcaccctatcaagtaattatgtttgaagtgatattgtgtcacgttaagtgacaacataatttatccct |
29765750 |
T |
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| Q |
216 |
acgtgaatacctaaacacaagttttatacattacttattagaatttttctgtgcgtcgtcggaactaaaaaaccaattagcac |
298 |
Q |
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|||||||||||||||||||||||||| | || ||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
29765751 |
acgtgaatacctaaacacaagtttta-----tgctagttagaatttttctgt--gtcgtcggaaccaaaaaaccaattagcac |
29765826 |
T |
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