View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_low_17 (Length: 322)
Name: NF14418_low_17
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 303
Target Start/End: Complemental strand, 36477283 - 36477010
Alignment:
| Q |
30 |
tgaagtgagtgggacttaccagagtcagggcaattgtcaatactcaaaaacgctaacaaaagcacttacaaataatccatcatgtatgttcgcctcaaat |
129 |
Q |
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| T |
36477283 |
tgaagtgagtggggctcaccagagtcagggcaattgtcaatactcaaaaacgctaacaaaagcacttacaaataatctatcatgtatgttcgcctcaaat |
36477184 |
T |
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| Q |
130 |
ttctttttcttactcaacatttaccgagcagttatttaatatttgatgtgaaggttttgaaaatccccacatgcatagttttatcttgaagcaaaatata |
229 |
Q |
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| T |
36477183 |
ttctttttcttactcaatatttaccgagcagttatttaatatttgatgtgaaggttttgaaaatccccacatgcatagttttatcttgaagcaaaatata |
36477084 |
T |
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| Q |
230 |
gggtacaaagggatttggacgtatatttattcggatttagaaaactactccttatctagcgatctagtgctagc |
303 |
Q |
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| T |
36477083 |
gggtacaaagggacttggacgtatatttattcggatttagaaaactactctttatctagtgatctagagctagc |
36477010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 36467480 - 36467407
Alignment:
| Q |
134 |
ttttcttactcaa--catttaccgagcagttatttaatatttgatgtgaaggttttgaaaatccccacatgcat |
205 |
Q |
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| T |
36467480 |
ttttcttactcaaaacatttaccgagcggttatataacatttgatgtcaaagttttgaaaatctctacatgcat |
36467407 |
T |
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