View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14418_low_2 (Length: 661)
Name: NF14418_low_2
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 34 - 655
Target Start/End: Original strand, 44397429 - 44398037
Alignment:
| Q |
34 |
ttttgttaatactaagaacctgtgtttggatatttctattattggatgaactgtgttgattctattacccataatccggagttaagtcaggagataagta |
133 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44397429 |
tttttttaatactaagaacctttgtttggatatttctattattggatgaactttgttgattctattacccataatccggag------------ataagta |
44397516 |
T |
|
| Q |
134 |
gggtttggataaagattgtttcagggtttctattcgtccttaactctaaagttcattaatcatttgagttcaatcacttacttggtttactttaacttcg |
233 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
44397517 |
aggtttggattaagattgtttcagggtttctattcgtccttaactctaaagttcattaatcattttagttcaatcacttacttggtt-actttaacttcc |
44397615 |
T |
|
| Q |
234 |
aaatttcaaaaaacatcaagtttattttatatttaattattgaagtttgtaaaattctattgaaacttttgttctcttgcatggttttgctttacatatt |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44397616 |
aaatttcaaaaaacatcaagtttattttatatttaattattgaagtttgtaaaattctattgaaacttttgttctcttgcatggttttgcttcacatatt |
44397715 |
T |
|
| Q |
334 |
ttggatttggaatacaaaagactttaattgaattattattttgttaaatttctgtgaagatctacttcctgtgatagaattgcataattgtaatggataa |
433 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44397716 |
ttgaatttggaatacaaaagactttaattgaattattattttgttaaatttctgtgaagatctacttcctgtgatagaattgcataattgtaatggataa |
44397815 |
T |
|
| Q |
434 |
acactggtagcaaatgttacaatcttgattgtaatgaatatataattaagtttttcaatcatgatgttaacgtctaacttttttccagatattgtgaggg |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44397816 |
acactggtagcaaatgttacaatcttgattgtaatgaatatataattaagtttttcaatcatgatgttaacgtctaacttttttccagatattgtgaggg |
44397915 |
T |
|
| Q |
534 |
agattttgagtgcctggcctgcggtctgtaagttgtgtgactcgacaaacaccagtcccctatatgctgctgcagttcaagatcacttggatgtggtaaa |
633 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44397916 |
agattttgagtgcctggcctgcggtctgtaagttgtgcgactcgacaaacaccagtcccctatatgctgctgctgttcaagatcacttggatgtggtaaa |
44398015 |
T |
|
| Q |
634 |
tgctattttggatgatgatgtc |
655 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
44398016 |
tgctattttggatgttgatgtc |
44398037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 512 - 655
Target Start/End: Original strand, 11358861 - 11359004
Alignment:
| Q |
512 |
ttttttccagatattgtgagggagattttgagtgcctggcctgcggtctgtaagttgtgtgactcgacaaacaccagtcccctatatgctgctgcagttc |
611 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||| || |||||||| || ||||| | ||||| ||||| || ||| ||||| |||| |
|
|
| T |
11358861 |
ttttttccagaaattgtgagggagattttgagtacttggcctgaggcttgtaagttatgcgactcttcgaacactagtccactttatttagctgctgttc |
11358960 |
T |
|
| Q |
612 |
aagatcacttggatgtggtaaatgctattttggatgatgatgtc |
655 |
Q |
| |
|
|||| || ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
11358961 |
aagaccatttggatgtggtgaatgctattttggatgttgatgtc |
11359004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 37606984 - 37606951
Alignment:
| Q |
180 |
taaagttcattaatcatttgagttcaatcactta |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
37606984 |
taaaattcattaatcatttgagttcaatcactta |
37606951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University