View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_low_3 (Length: 569)
Name: NF14418_low_3
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 178 - 495
Target Start/End: Complemental strand, 53263734 - 53263410
Alignment:
| Q |
178 |
gtgaactggtcaaagttcaaagtaaggaccaaggatgtttattttatatatgtgttgattgagcttgatgttgtatnnnnnnnn-ctaagtgaaaagtcc |
276 |
Q |
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| T |
53263734 |
gtgaactggtcaaagttcaaagtaaggaccaaggatgtttattttatatatgttttgattgagcttgatgttgtataaaaaaaaactaagtgaaaagtcc |
53263635 |
T |
|
| Q |
277 |
cctgctcgcatttcttgttcttggacgatgtcaatactcaattgaaaagtccagacgttgatacatacatgttcagggaaccagcatgacca----aata |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53263634 |
cctgctcgcatttcttgttcttggacgatgtcaatactcaattgaaaagtccagacgttgatacatacatgttcagggaaccagcatgaccaatataata |
53263535 |
T |
|
| Q |
373 |
taaattttcaagcttaaaatatgttaaccttgctgc--tatatatgttttctttagtcgagttttctctctcttcagttttaaaaacatattacaatttg |
470 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
53263534 |
taaattttcaagcttaaaatatgttaaccttgctgctatatatatgttttctttagtcaagttttttctctcttcagttttaaaaacatattacaatttg |
53263435 |
T |
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| Q |
471 |
ctgtaatttaaatttgattgattac |
495 |
Q |
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| T |
53263434 |
ctgtaatttaaatttgattgattac |
53263410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 53263950 - 53263788
Alignment:
| Q |
20 |
gagaacatgttccacctcttccactcatatcggccaaactcattttaaacccttgatcttaaactattctcattgtctagaattgaatgaaaattgtcca |
119 |
Q |
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| T |
53263950 |
gagaacatgttccacctcttccattcatatcggccaaactcattttaaacctttgatcttaaactattctcattgtctagaattgaatgaaaattgtcca |
53263851 |
T |
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| Q |
120 |
cgagaaaattaggggttattttcaaaattttaaaaacatcagtatgctaatttactacgtgaa |
182 |
Q |
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| T |
53263850 |
cgagaaaattaggggttattttcaaaattttaaaaacatcagtatgctaattaactacgtgaa |
53263788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 557
Target Start/End: Complemental strand, 53263409 - 53263376
Alignment:
| Q |
524 |
atgcttatgccttgtttctttgtttgagtataat |
557 |
Q |
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| T |
53263409 |
atgcttatgccttgtttctttgtttgagcataat |
53263376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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