View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_low_5 (Length: 510)
Name: NF14418_low_5
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 134 - 431
Target Start/End: Complemental strand, 8343870 - 8343574
Alignment:
| Q |
134 |
tatagtgactgggtttatatttaatttctgacgtaaaaataaaacagtgtaaatatttgacatga-agtagtggtacacagataatgacttgtgcttttg |
232 |
Q |
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| T |
8343870 |
tatagtgactgggtttatatttaatttctgacgtaaaaataaaactgtgtaaatatttgacatgagagtagtagtacacagataatgacatgtgcttttg |
8343771 |
T |
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| Q |
233 |
aaaaagtgggtaataacttagttaannnnnnncagtgttttgacggtataactataaatacatcaaaggatgatatatnnnnnnnnttacataacattat |
332 |
Q |
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| T |
8343770 |
aaaaagtgggtaataacttagttaatttttttcagtgttttgacagtataactataaatacatcaaaggatgatatat-aaaaaaattgcataacattat |
8343672 |
T |
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| Q |
333 |
tttagcattaaattagataattgtactccaaaattaaatcctaataaaatactatacacctaaactcaaatcatgtcacaactccatcactacaatagt |
431 |
Q |
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| T |
8343671 |
tttagcattaaattagataattgtactccaaaattaaatcctaataaaatactatagacctaaactc-aatcatgtcacaactccattactccaatagt |
8343574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 431 - 493
Target Start/End: Complemental strand, 8343520 - 8343457
Alignment:
| Q |
431 |
tatagttgcagtgtccttt-gtggttcccatgggccaagtatggagtataaaatggctgctaat |
493 |
Q |
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| T |
8343520 |
tatagttgcagtgtccttttgtggttcccatgggccaagtctggagtataaaatggctgctaat |
8343457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 8344257 - 8344202
Alignment:
| Q |
17 |
aatatttaaaggtcaaaggatcctggtttgaccatgtttatgaagatttaaaaata |
72 |
Q |
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| T |
8344257 |
aatatttaaagctcaaaggatcctggtttgaccatgtttatgaagatttaaaaata |
8344202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 8343909 - 8343876
Alignment:
| Q |
71 |
tatttaatttctgacgtaaattgaatgaaggcat |
104 |
Q |
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| T |
8343909 |
tatttaatttctgacgtaaattgaatgaaggcat |
8343876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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