View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14418_low_8 (Length: 421)
Name: NF14418_low_8
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 32505004 - 32505403
Alignment:
| Q |
1 |
ctatcacattaaagtgtgatgttgtagggtgggttcaaataatcaaatacaagcagagctcaaaaccatgcataacaatagcacttaattagaaaatcac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32505004 |
ctatcacattaaagtgtgatgttgtagggtgggttcaaataatcaaatacaag---agatcaaaaccatgcataacaatagcacttaattagaaaatcac |
32505100 |
T |
|
| Q |
101 |
agaactagcttatcatacagctcatctcattaaattgctattacccttccctttatcatgcatgattcctcaatggttaaaaaatttcatagctgaatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32505101 |
agaactagcttatcatacagctcatctcattaaattgctattacccttctctttatcatgcatgattcctcaatggttaaaaaatttcaaagctgaatta |
32505200 |
T |
|
| Q |
201 |
ctttaattgtgctaagatcaagaacaatgtgaatggtttgacaattgggtggggcagatgacatttgaagggtggtacgtatgagttctgcttacgactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32505201 |
ctttaattgtgctaagatcaagaacaatgtgaatggtttgacaattgggtggggcagatgacatttgaagggtggtacgtatgagttctgcttaggactc |
32505300 |
T |
|
| Q |
301 |
gacaagacattgattttgtttctctctgtacatttacgtgtactgctaaccttcactgcccaattgccaacaaagtttttcattcatggggtcatgggac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32505301 |
gacaagacattgattttgtttctctctgtacatttacgtgtactgctaaccttcactgcccaattgccaacaaagtttttcattcatggggtcatgggac |
32505400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University