View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14418_low_9 (Length: 409)
Name: NF14418_low_9
Description: NF14418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14418_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 48 - 257
Target Start/End: Complemental strand, 10698787 - 10698578
Alignment:
| Q |
48 |
aactttctcaggcatttaaaatttccatctatgac---atgaaaaataatatataaagtataaactaatatatacataggctcaattactcatgtgttca |
144 |
Q |
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| T |
10698787 |
aactttctcaggcatttaaaatttccatctatgacgacatgaaaaagaatatataaagtataaactaatatatacataggcttaattaatcaagtgttca |
10698688 |
T |
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| Q |
145 |
ttgttatttcctcaacaaaacnnnnnnngtgttcattgttatcgtctttttcttctgaaaaagcactcaagtttccttgtttaaaataacttacaaacaa |
244 |
Q |
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| T |
10698687 |
ttgttatttcctcaacaaaa---agaaagtgttcattgttatcgtctttttcttctgaaaaagcactcaagtttccttgtttaaaataacttacaaacaa |
10698591 |
T |
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| Q |
245 |
tttttcactatcc |
257 |
Q |
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| T |
10698590 |
tttttcactatcc |
10698578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 10698483 - 10698433
Alignment:
| Q |
346 |
tttgtgatcaataataagagatgaatttgattttcttttatcactgatatt |
396 |
Q |
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| T |
10698483 |
tttgtgatcaataataagagatgaatttgattttcttttgtcactaatatt |
10698433 |
T |
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