View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_high_14 (Length: 364)
Name: NF14419_high_14
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 35542633 - 35542298
Alignment:
| Q |
19 |
gaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttcctcaaaggtgcgcgtgtcaaatt |
118 |
Q |
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| T |
35542633 |
gaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacggtgttcctcaaaggtgcgcgtgtcaaatt |
35542534 |
T |
|
| Q |
119 |
gaaacttttcgcatcacgtggtttgaatttcccttctccatatcccaaaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactaccattc |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35542533 |
gaaacttttcgcatcaagtggtttgaatttcccttctccatatcccaaaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactaccattc |
35542434 |
T |
|
| Q |
219 |
ccatgtaactggtttgcattctgtagtatcacatcaacaatctcatctttattaaacatgtaaacaccgttaccagtagttgtatttggattaattggat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
35542433 |
ccatgtaactggtttgcattctgtagtatcacatcaacaatctcatctttattaaacatgtaaacaccgttaccggtagttgtatttggattaactggat |
35542334 |
T |
|
| Q |
319 |
ttttaaatatgtcgtaatcctttggaaatgtctctg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35542333 |
ttttaaatatgtcgtaatcctttggaaatgtctctg |
35542298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 35509941 - 35509603
Alignment:
| Q |
19 |
gaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttcctcaaaggtgcgcgtgtcaaatt |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
35509941 |
gaaatgcccaaacaccaggattatctgccttaaaccttagtgcagtccaaccatatggaaatataactgcagtgttcctcaaaggtgcacgtgtcaaatt |
35509842 |
T |
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| Q |
119 |
gaaacttttcgcatca---cgtggtttgaatttcccttctccatatcccaaaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactacca |
215 |
Q |
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||||||| || ||||| | |||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35509841 |
gaaacttctctcatcaactcctggtctaaatctcccttcaccatatcccaaaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactacca |
35509742 |
T |
|
| Q |
216 |
ttcccatgtaactggtttgcattctgtagtatcacatcaacaatctcatctttattaaacatgtaaacaccgttaccagtagttgtatttggattaattg |
315 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||| ||||| | ||| |||||||||| || || |||||||| |||||||| | || |
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| T |
35509741 |
ttcccatttaactggtttgcattttgtagtatcacatcaacaacctcattcaactggaacgtgtaaacaccattgccggtagttgtgtttggattcactg |
35509642 |
T |
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| Q |
316 |
gatttttaaatatgtcgtaatcctttggaaatgtctctg |
354 |
Q |
| |
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|||||||||||||||| |||||| |||||||| |||||| |
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| T |
35509641 |
gatttttaaatatgtcataatccattggaaatctctctg |
35509603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 35528138 - 35527816
Alignment:
| Q |
19 |
gaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttcctcaaaggtgcgcgtgtcaaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||| ||||| |
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| T |
35528138 |
gaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatataactgcagtgttcctcaaaggcgcacgtgttaaatt |
35528039 |
T |
|
| Q |
119 |
gaaacttttcgcat---cacgtggtttgaatttcccttctccatatcccaaaacccaaaaatcatgtccatgcaaatgccatggatgaatttcactacca |
215 |
Q |
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||||||||| || ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |
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| T |
35528038 |
caaacttttctgatgaacacctggttcaaatttcccttcaccatatcccaaaacccaaaaatcatgtccatgtaaatgccatggatgaacttcactagta |
35527939 |
T |
|
| Q |
216 |
ttcccatgtaactggtttgcattctgtagtatcacatcaacaatctcatctttattaaacatgtaaacaccgttaccagtagttgtatttggattaattg |
315 |
Q |
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||| | | ||| ||||||||| ||||||||||||||||||| ||||| | |||| |||||||||||||||| || ||||| ||||||||| | |
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| T |
35527938 |
ttctctttcaacatgtttgcattttgtagtatcacatcaacaacctcattcaactgaaacgtgtaaacaccgttaccggttattgtacttggattaaccg |
35527839 |
T |
|
| Q |
316 |
gatttttaaatatgtcgtaatcc |
338 |
Q |
| |
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|| |||||||||| ||| ||||| |
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| T |
35527838 |
gagttttaaatatatcgaaatcc |
35527816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 35953968 - 35953808
Alignment:
| Q |
19 |
gaaatgcccaaacaccagggttatctgccttaaaccttaatgcagtccaaccatacggaaatacaaccacagtgttcctcaaaggtgcgcgtgtcaaatt |
118 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| ||| | || | ||| | ||| |
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| T |
35953968 |
gaaatgcccaaactccaggattatctgccttaaaccttaatgcagtccaaccatatggaaatgtaactgcagtgttccttaaacgcgcacttgttagatt |
35953869 |
T |
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| Q |
119 |
gaaacttttcgcat---cacgtggtttgaatttcccttctccatatcccaaaacccaaaaa |
176 |
Q |
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| | ||| ||| ||| | |||||||||||| ||||||||||||||||||||||||| |
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| T |
35953868 |
acatttcttctcatcaacacctagtttgaatttcctttctccatatcccaaaacccaaaaa |
35953808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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