View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_high_17 (Length: 357)
Name: NF14419_high_17
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 8749770 - 8749432
Alignment:
| Q |
1 |
gaatgggacgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8749770 |
gaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
8749671 |
T |
|
| Q |
101 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatatccctaacctaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8749670 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaat |
8749571 |
T |
|
| Q |
201 |
tcaaatttatttcatctacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaatttttgatggaaaggggcaataaaaaatatacatgatt |
300 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8749570 |
tcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgatt |
8749471 |
T |
|
| Q |
301 |
tcatcttatccatctttattctttatcaatggcagagaa |
339 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
8749470 |
tcatcttgtccatctttattctttatcaatggcagagaa |
8749432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 24963452 - 24963790
Alignment:
| Q |
1 |
gaatgggacgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
100 |
Q |
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| T |
24963452 |
gaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
24963551 |
T |
|
| Q |
101 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatatccctaacctaat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24963552 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaat |
24963651 |
T |
|
| Q |
201 |
tcaaatttatttcatctacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaatttttgatggaaaggggcaataaaaaatatacatgatt |
300 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24963652 |
tcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgatt |
24963751 |
T |
|
| Q |
301 |
tcatcttatccatctttattctttatcaatggcagagaa |
339 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
24963752 |
tcatcttgtccatctttattctttatcaatggtagagaa |
24963790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 38112882 - 38113220
Alignment:
| Q |
1 |
gaatgggacgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38112882 |
gaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
38112981 |
T |
|
| Q |
101 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatatccctaacctaat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38112982 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaat |
38113081 |
T |
|
| Q |
201 |
tcaaatttatttcatctacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaatttttgatggaaaggggcaataaaaaatatacatgatt |
300 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38113082 |
tcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgatt |
38113181 |
T |
|
| Q |
301 |
tcatcttatccatctttattctttatcaatggcagagaa |
339 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| |
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| T |
38113182 |
tcatcttgtccatctttattctttatcaatggtagagaa |
38113220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 40403846 - 40403508
Alignment:
| Q |
1 |
gaatgggacgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40403846 |
gaatgggatgtgtgttgaagaccttgacatgttgaggaaatgaagaatggaggtggtggtggttcaaatccggccatggcgtcaccggattcagagaaat |
40403747 |
T |
|
| Q |
101 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatatccctaacctaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40403746 |
gttggctgtttattttcaatacatgtgcaaattgcaagcgagcaatttccagatactttctctaacatctctcttggttgaacaatctccctaacctaat |
40403647 |
T |
|
| Q |
201 |
tcaaatttatttcatctacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaatttttgatggaaaggggcaataaaaaatatacatgatt |
300 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40403646 |
tcaaatttatttcctccacaccaaaacaaagcattgaatgatttaatttcagtttaagaaaagttttgatggaaaggggcaataaaaaatatacatgatt |
40403547 |
T |
|
| Q |
301 |
tcatcttatccatctttattctttatcaatggcagagaa |
339 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40403546 |
tcatcttgtccatctttattctttatcaatggcagagaa |
40403508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 7758926 - 7758965
Alignment:
| Q |
10 |
gtgtgttgaagaccttgacatgttgaggaaatgaagaatg |
49 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
7758926 |
gtgtgttgaaggccttgacatgttgagggaatgaagaatg |
7758965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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