View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14419_high_24 (Length: 238)
Name: NF14419_high_24
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_high_24 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18927165 - 18926939
Alignment:
| Q |
1 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18927165 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgatagaatccctc |
18927066 |
T |
|
| Q |
101 |
agaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
200 |
Q |
| |
|
|| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18927065 |
aggaatggatctacgatctgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
18926966 |
T |
|
| Q |
201 |
aaggtggccttgcacacaataactcaa |
227 |
Q |
| |
|
||||||||||||||||||||| ||||| |
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|
| T |
18926965 |
aaggtggccttgcacacaatacctcaa |
18926939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4665625 - 4665843
Alignment:
| Q |
1 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| | |||| |||||| |||||||| |
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|
| T |
4665625 |
cacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaacgccaacttgcaataatatttcaagtactcatctgtgatagaatccctt |
4665724 |
T |
|
| Q |
101 |
agaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
200 |
Q |
| |
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| | |||||| || ||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||||| || |||||||| ||||| ||||||| |
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|
| T |
4665725 |
acgaatggatcaactatttgttcaattgccacaccttcatcgtaacattttttaaaccaacaaactagactagcagtattcttatccaaatcacgaacca |
4665824 |
T |
|
| Q |
201 |
aaggtggccttgcacacaa |
219 |
Q |
| |
|
||||||| || |||||||| |
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|
| T |
4665825 |
aaggtggtctagcacacaa |
4665843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4671330 - 4671548
Alignment:
| Q |
1 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||| ||| ||||| |||||||| |
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|
| T |
4671330 |
cacttgactcattgagggtcgttgagttccatcatcatgcaagcaactcaacgccaacttgcaataatattccaaacactcacccgtgatagaatccctt |
4671429 |
T |
|
| Q |
101 |
agaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
200 |
Q |
| |
|
|| | || ||| | ||||||| ||| | |||||||||||||| ||||||| ||||||||||||||||||||| || |||||||| ||||||||||||| |
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|
| T |
4671430 |
aggaatgaatccagtatttgttcaatcgccacaccttcatcgtagcatcttttaaaccaacaaactagactagctgtattcttatccaaatcgcgaacca |
4671529 |
T |
|
| Q |
201 |
aaggtggccttgcacacaa |
219 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
4671530 |
aaggtggcctagcacacaa |
4671548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4629599 - 4629817
Alignment:
| Q |
1 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||| |||||| |||||||| |
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|
| T |
4629599 |
cacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaacgccaacttgcaataatatttcaagcactcaactgtgatagaatccctt |
4629698 |
T |
|
| Q |
101 |
agaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
200 |
Q |
| |
|
| | |||||| || ||||||| ||| | |||||||||| | ||| ||||||||||||||||||||||||| || |||||||| ||||| ||||||| |
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|
| T |
4629699 |
aagaatggatcgactatttgttcaatcgccacaccttcattatggcatttttgaaaccaacaaactagactagctgtattcttatccaaatcacgaacca |
4629798 |
T |
|
| Q |
201 |
aaggtggccttgcacacaa |
219 |
Q |
| |
|
||||||| || |||||||| |
|
|
| T |
4629799 |
aaggtggtctagcacacaa |
4629817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4660491 - 4660709
Alignment:
| Q |
1 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctc |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||| ||||| ||||| | |
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|
| T |
4660491 |
cacttgactcattgaaggtcgttgagtcccatcatcatgcaaacaacttaacgccaacttgcaataatattccaaacactcatccgtgatagaatctttt |
4660590 |
T |
|
| Q |
101 |
agaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
200 |
Q |
| |
|
|| |||||| || ||||||| ||| | ||||||||||| || ||||||| |||||||||||||||||||| || |||||||| ||||||||||||| |
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|
| T |
4660591 |
agggatggatccactatttgttcaatcgccacaccttcatcatagcatcttttaaaccaacaaactagactagttgtattcttatccaaatcgcgaacca |
4660690 |
T |
|
| Q |
201 |
aaggtggccttgcacacaa |
219 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
4660691 |
atggtggcctagcacacaa |
4660709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 4652211 - 4652428
Alignment:
| Q |
2 |
acttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctca |
101 |
Q |
| |
|
|||||| ||||||| || |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| || || | |||||| ||| |||| | |
|
|
| T |
4652211 |
acttgactcattgatggacgttgagtcccatcatcatgcacacaactcaacgccagcttgcaataatatttcaagcactcctctgtgatagaacccctta |
4652310 |
T |
|
| Q |
102 |
gaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaaccaa |
201 |
Q |
| |
|
| | |||||| || ||||||| ||||| |||||||||||||| ||| ||| |||||||||||||||||| || || |||||||| ||||| |||||||| |
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|
| T |
4652311 |
ggaatggatccactatttgttcaattgccacaccttcatcgtagcattttttaaaccaacaaactagacttgctgtattcttatccaaatcacgaaccaa |
4652410 |
T |
|
| Q |
202 |
aggtggccttgcacacaa |
219 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
4652411 |
aggtggtctagcacacaa |
4652428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4635547 - 4635765
Alignment:
| Q |
1 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctc |
100 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |||||| ||||| || ||||| ||||| || |
|
|
| T |
4635547 |
cacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaacgccaacttgcaaaaatattcaaaacactcgcccgtgatggaatctctt |
4635646 |
T |
|
| Q |
101 |
agaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
200 |
Q |
| |
|
|| | |||||| || ||||||| ||| | |||||||| ||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
4635647 |
aggaatggatccaccatttgttcaatcgccacaccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaacca |
4635746 |
T |
|
| Q |
201 |
aaggtggccttgcacacaa |
219 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
4635747 |
aaggtggcctagcacacaa |
4635765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4642394 - 4642612
Alignment:
| Q |
1 |
cacttgattcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctc |
100 |
Q |
| |
|
||||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||| ||||| || ||||| ||||| || |
|
|
| T |
4642394 |
cacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaacgccaacttgcaataatattctaaacactcgcccgtgatggaatctctt |
4642493 |
T |
|
| Q |
101 |
agaagtggatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaacca |
200 |
Q |
| |
|
|| | |||||| || ||||||| ||| | |||||||| ||||| ||||||| |||||||||||||||||||| || |||||||| |||| ||||||| |
|
|
| T |
4642494 |
aggaatggatccactatttgttcaatcgccacaccttcttcgtagcatcttttgaaccaacaaactagactagcagtattcttatccaaattacgaacca |
4642593 |
T |
|
| Q |
201 |
aaggtggccttgcacacaa |
219 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
4642594 |
aaggtggcctagcacacaa |
4642612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 4676722 - 4676935
Alignment:
| Q |
8 |
ttcattgagggtcgttgagtcccatcatcatgcaaacaactcaacgccaacttgcagtaatatttcaaacattcatttgtgattgaatccctcagaagtg |
107 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||| |||||||| ||| | || ||||||| |||| | || | | |||| |||| ||| || | || |
|
|
| T |
4676722 |
ttcattgggggtcgctgagtcccatcattatgcaaataactcaacatcaaagttcaataatattacaaaaactcctctatgatagaattccttaggaatg |
4676821 |
T |
|
| Q |
108 |
gatctacgatttgtttaattggaacaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaaccaaaggtgg |
207 |
Q |
| |
|
|||| || ||||||||||||| ||| |||| | ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || |
|
|
| T |
4676822 |
gatccactatttgtttaattgccacatattcaccctaacatctttgaaaccaacaaactaaactagtcgtcttcttgtctaaatcgcgaaccaaaggcgg |
4676921 |
T |
|
| Q |
208 |
ccttgcacacaata |
221 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
4676922 |
cctagcacataata |
4676935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 4698486 - 4698390
Alignment:
| Q |
131 |
acaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaaccaaaggtggccttgcacacaataactcaa |
227 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | |||| ||| || | ||||| || ||| |||||||||||||| || |||||||||| ||||| |
|
|
| T |
4698486 |
acaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaa |
4698390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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