View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_high_3 (Length: 501)
Name: NF14419_high_3
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 183 - 429
Target Start/End: Complemental strand, 13728903 - 13728657
Alignment:
| Q |
183 |
tgaaatcttaagtataatttaaaagttagaacaatttttggcattgaaatcttaaagggaaatcttaatttttgacattgatttcaaatttgtcagtaac |
282 |
Q |
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| T |
13728903 |
tgaaatctcaagaataatttaaaatctagaacaatttttggcattgaaatcttaaagggaaatcttaatttttgacattgatttcaaatttgtcagtaac |
13728804 |
T |
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| Q |
283 |
tacccaagtctagactcactcaaacccaaaccgctattggtttagctgctgataaaggatgggacaacaagatatttgagtcagattcccatactttggt |
382 |
Q |
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| T |
13728803 |
tacccaagtctagactcgctcaaacccaaaccgctattggtttagctgctgataaaggttgggacaacaagatatttgagtcagattcccatactttggt |
13728704 |
T |
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| Q |
383 |
acacactgttaggtccctcatcaaggagtttcatagttttatgccat |
429 |
Q |
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| T |
13728703 |
acacactgttaggtccctcatcaaggagtttcataattttataccat |
13728657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13729513 - 13729311
Alignment:
| Q |
1 |
ccgaagacaacgactcgcccatctatcacttgtaatagtcatatgtggaacacatgcaagtccaactttaaattcataactaaaaatattggaatatgca |
100 |
Q |
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| T |
13729513 |
ccgaagacaacgactcgcccatctatcacttgtaatagtcatatgtggaacacatgcaagtccaactttaaattcataactaaaaatattggaatatgca |
13729414 |
T |
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| Q |
101 |
tgacacggtggaaattagcttagatttaaaaagctcaaaaatctgtgttttacacaatgaaatctttatgacccaatcaaaatgaaatcttaagtataat |
200 |
Q |
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| T |
13729413 |
tgacacggtggaaattagcttagatttaaaaagctcaaaaatctgtgttttacacaatgaaatctttatgaccaaatcaaaatgaaatcttaagtataat |
13729314 |
T |
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| Q |
201 |
tta |
203 |
Q |
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| T |
13729313 |
tta |
13729311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 428 - 485
Target Start/End: Complemental strand, 13727204 - 13727147
Alignment:
| Q |
428 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaac |
485 |
Q |
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| T |
13727204 |
attatatcttctattaatattgaattagctttaacgtgaagtttattaggcaacaaac |
13727147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 13728935 - 13728896
Alignment:
| Q |
195 |
tataatttaaaagttagaacaatttttggcattgaaatct |
234 |
Q |
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| T |
13728935 |
tataatttaaaatttagaacaatttttggcattgaaatct |
13728896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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