View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_high_30 (Length: 203)
Name: NF14419_high_30
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 11592414 - 11592578
Alignment:
| Q |
20 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592414 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11592513 |
T |
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| Q |
120 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcc |
184 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11592514 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcc |
11592578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 11645705 - 11645541
Alignment:
| Q |
20 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645705 |
atgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttgtcttggcataacc |
11645606 |
T |
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| Q |
120 |
ctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcc |
184 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11645605 |
ctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcc |
11645541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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