View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_11 (Length: 400)
Name: NF14419_low_11
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 12360367 - 12360738
Alignment:
| Q |
19 |
aaacgagggaataatcattgcgaatatatgacatattagttatatattgtcacctcctccggtgtgaaaaccatcgccaagtggatcattattgttccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12360367 |
aaacgagggaataatcattgcgaatatatgacatattagttatatattgtcacctcctcctgtgtgaaaaccatcgccaagtggatcattattgttccaa |
12360466 |
T |
|
| Q |
119 |
ggagaaggatagtagaatgccggaggaggagattgaccaagagaagaaccacctccatcttcaccaccaatcctcgtagctgcgatatcatgattaggaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12360467 |
ggagaaggatagtagaatgccggaggaggagattgaccaagagaagaaccacctccatcttcaccaccaatcctcgtagctgcgatatcatgattcggaa |
12360566 |
T |
|
| Q |
219 |
tttcagtgcaagtagtatagcgaatcaaatcagcgttagtagcatcaagttccttttggagcctaataacttgtctttggaggactgaaatggcaccgac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12360567 |
tttcagtgcaagtagtatagcgaatcaaatcagcgttagtagcatcaagttccttttggagcctaataacttgtctttggaggactgaaatggcaccgac |
12360666 |
T |
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| Q |
319 |
gcaaccataaactggatcttttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12360667 |
gcaaccataaactggatcttttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttg |
12360738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 239 - 390
Target Start/End: Complemental strand, 601012 - 600861
Alignment:
| Q |
239 |
cgaatcaaatcagcgttagtagcatcaagttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatctt |
338 |
Q |
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| T |
601012 |
cgaatcaaatcagcatttgtagcatcaagttccttttggagcctaaagagttgtccttggaggactgaaatagctccaacacaaccatacactggatttt |
600913 |
T |
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| Q |
339 |
ttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttg |
390 |
Q |
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| T |
600912 |
taatccttgcttcagcttcataagctagagaattcactgtatcttctctttg |
600861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 390
Target Start/End: Complemental strand, 591435 - 591284
Alignment:
| Q |
239 |
cgaatcaaatcagcgttagtagcatcaagttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatctt |
338 |
Q |
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||||||||||| || || |||||||| ||||||||||| ||| ||| | ||||||||| || || || || || || || |||||||| |||||||||| |
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| T |
591435 |
cgaatcaaatcggcatttgtagcatcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctt |
591336 |
T |
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| Q |
339 |
ttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttg |
390 |
Q |
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| T |
591335 |
taatccttgcttcagcttcataagctagagaattcaccgtatcttctctttg |
591284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 384
Target Start/End: Complemental strand, 34675495 - 34675373
Alignment:
| Q |
262 |
atcaagttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatcttttatccttgcctcagcttcataa |
361 |
Q |
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||||||||||||||| || || ||||||||| || |||| || || ||||| || ||||||||||| |||||| | | | |||||| ||||||||| |
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| T |
34675495 |
atcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatctctcacacgtgcctcggcttcataa |
34675396 |
T |
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| Q |
362 |
gcaagagagttcactgcatcttc |
384 |
Q |
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||||| || |||||||||||||| |
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| T |
34675395 |
gcaagggaattcactgcatcttc |
34675373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 32036335 - 32036399
Alignment:
| Q |
326 |
taaactggatcttttatccttgcctcagcttcataagcaagagagttcactgcatcttccctttg |
390 |
Q |
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|||||||| ||| | | |||||| |||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
32036335 |
taaactgggtctctaagccttgcttcagcttcataagcaagagaattcactgtgtcttctctttg |
32036399 |
T |
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