View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14419_low_12 (Length: 388)
Name: NF14419_low_12
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_12 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0007 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 8068 - 7700
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8068 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
7969 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7968 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
7869 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7868 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
7769 |
T |
|
| Q |
318 |
ttctcaactaatatccaggtcgcatgtgatatatttaagtgcaaataatatatatttcttctcactcga |
386 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
7768 |
ttctcaactaatatccacgtcgcatgtgatatatttaagtgcaaataatatatatttcttgtaactcga |
7700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 18994925 - 18995293
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18994925 |
attggcagattgagtagaacttgattctagtgcaagaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaatt |
18995024 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18995025 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
18995124 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
317 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18995125 |
catttgcagaataatcttctttaatatttaggtccaaaatacttataggtgtttgatccatccactgtctccatacctgaaataatgtgtgaaatccaat |
18995224 |
T |
|
| Q |
318 |
ttctcaactaatatccaggtcgcatgtgatatatttaagtgcaaataatatatatttcttctcactcga |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
18995225 |
ttctcaactaatatccaggtcgcatgtgatatatttaagtgcaaataatatatatttcttgtaactcga |
18995293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 22209900 - 22209585
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22209900 |
attggcagattgagtagaacttgattctagtgcaagaacgtccgaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaatt |
22209801 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||| |||| |
|
|
| T |
22209800 |
gcataactgctaagataagaagcaactgtcgcaattgaaggtctagcatccgggtcattttgaacacataatagaccaatctgaatgtacttaattactt |
22209701 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
317 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
22209700 |
catttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatccattgtctccatacctgaaatattgtgtgaaattaaat |
22209601 |
T |
|
| Q |
318 |
ttctcaactaatatcc |
333 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
22209600 |
ttctcaattactatcc |
22209585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 20235250 - 20235593
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
20235250 |
attggcagattgagtagaacttgattcttgtgcaagaatgtttgaattctttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaact |
20235349 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
20235350 |
gcataactgctaaggtaagaagaaactgtcgagattgaaggtctagcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgactt |
20235449 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
317 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||| |
|
|
| T |
20235450 |
catttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatccattgtctccatacctgaattaatgtgtgaaattaaat |
20235549 |
T |
|
| Q |
318 |
ttctcaactaatatccaggtcgcatgtgatatatttaagtgcaa |
361 |
Q |
| |
|
|||||| || ||||| ||||| |||||||||||||||| |||| |
|
|
| T |
20235550 |
ttctcagttattatcctggtcgtatgtgatatatttaagagcaa |
20235593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 22129234 - 22129577
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||| |||||||||||||||| | |
|
|
| T |
22129234 |
attggcagattgagtagaacttgattcttgtgcaagaatgtttgaattctttctaccatgcaagaaaaacgcaggttctttcggagttggtaattcaact |
22129333 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
22129334 |
gcataactgctaaggtaagaagaaactgtcgagattgaaggtctagcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgactt |
22129433 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
317 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||| |
|
|
| T |
22129434 |
catttgtagaataatcttcttgaatatttgggtccaaaatacttaaaggtgtttgatccatccattgtctccatacctgaattaatgtgtgaaattaaat |
22129533 |
T |
|
| Q |
318 |
ttctcaactaatatccaggtcgcatgtgatatatttaagtgcaa |
361 |
Q |
| |
|
|||||| || ||||| ||||| |||||||||||||||| |||| |
|
|
| T |
22129534 |
ttctcagttattatcctggtcgtatgtgatatatttaagagcaa |
22129577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 20083279 - 20083573
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |
|
|
| T |
20083279 |
attggtagattgagtagaacttgattcttgtgcaagaacatttgaataagttctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaact |
20083378 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
20083379 |
gcataactgctaagataagaagcaactgtcacgatcgaaggtctggcatccgggtcatgttgaacacataatagaccaatctgaatgcacttaatgactt |
20083478 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaat |
312 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
20083479 |
catttgtagaataatcttctttaatatttggatccagtatacttaaaggtgtttgctccatccacagtctccatacctgaaataatgtgtgaaat |
20083573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 18990339 - 18990629
Alignment:
| Q |
21 |
ggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgca |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
18990339 |
ggcagattgagtagaactagattcttgtgcaagaacgtttgaatccct-ctaccatgcaagaaaaacgcaggttctggtggagttggtaattcaactgca |
18990437 |
T |
|
| Q |
121 |
taactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcat |
220 |
Q |
| |
|
||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
18990438 |
taaatgctaagataagaagcaactgtcacgatcgaaggtctagcatccgggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcat |
18990537 |
T |
|
| Q |
221 |
ttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaat |
312 |
Q |
| |
|
||||||||||||||| || ||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
18990538 |
ttgtagaataatcttcttcaatatttggatccagtatacttaaaggtgtttcctccatccaccgtctccatacctgaaataatgtgtgaaat |
18990629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 61 - 312
Target Start/End: Original strand, 18979026 - 18979277
Alignment:
| Q |
61 |
gaataagttctaccatgcaagagaaa-cgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggt |
159 |
Q |
| |
|
||||| |||||||||||||| | ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
18979026 |
gaatatgttctaccatgcaataaaaaacgcaggttcttgcggagttggtaattcaactgcataactgctaagataagaaggaactgtcacaatcgaaggt |
18979125 |
T |
|
| Q |
160 |
ctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatac |
259 |
Q |
| |
|
||| ||| |||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||| || || |||||||||||| |||| ||||| |
|
|
| T |
18979126 |
cta-catccgggtcatttcgaacacataatcgaccaatctaaatgcacttaatgacttcatttgtagaatgatattctttaatatttggatccagtatac |
18979224 |
T |
|
| Q |
260 |
ttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaat |
312 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
18979225 |
ttaaaggtgtttcctccatccaccgtctccatacctgaaataatgtgtgaaat |
18979277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 63 - 299
Target Start/End: Original strand, 22085446 - 22085682
Alignment:
| Q |
63 |
ataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggtcta |
162 |
Q |
| |
|
|||| ||||||| |||| || ||| ||||||| || |||||||||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
22085446 |
ataatttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtcta |
22085545 |
T |
|
| Q |
163 |
gcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatactta |
262 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
22085546 |
gcctctgggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatattta |
22085645 |
T |
|
| Q |
263 |
aaggtgtttgatccatccactgtctccatacctgaaa |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22085646 |
aaggtgttttatccatccactgtctccatacctgaaa |
22085682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 69 - 299
Target Start/End: Original strand, 22001393 - 22001623
Alignment:
| Q |
69 |
tctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggtctagcattc |
168 |
Q |
| |
|
|||||| |||| || ||| ||||||| || ||||||| |||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
22001393 |
tctaccttgcaggaaaaatgcaggttgttgtggagttcgtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctct |
22001492 |
T |
|
| Q |
169 |
gggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaaggtg |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
22001493 |
gggtcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaataatctcctttaatatttgggtccaatatatttaaaggtg |
22001592 |
T |
|
| Q |
269 |
tttgatccatccactgtctccatacctgaaa |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
22001593 |
ttttatccatccactgtctccatacctgaaa |
22001623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 67 - 299
Target Start/End: Original strand, 21967121 - 21967353
Alignment:
| Q |
67 |
gttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggtctagcat |
166 |
Q |
| |
|
|||||||| |||| || ||| ||||||| || |||||||||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
21967121 |
gttctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcct |
21967220 |
T |
|
| Q |
167 |
tcgggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaagg |
266 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
21967221 |
ctggatcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaagg |
21967320 |
T |
|
| Q |
267 |
tgtttgatccatccactgtctccatacctgaaa |
299 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| |
|
|
| T |
21967321 |
tgttttatccatccactgtctccacacctgaaa |
21967353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 69 - 299
Target Start/End: Original strand, 21967569 - 21967799
Alignment:
| Q |
69 |
tctaccatgcaagagaaacgcaggttcttttggagttggtaattcaattgcataactgctaagataagaagcaactgtcacaattgaaggtctagcattc |
168 |
Q |
| |
|
|||||| |||| || ||| ||||||| || |||||||||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
21967569 |
tctaccttgcaggaaaaatgcaggttgttgtggagttggtaactcaattgaatgactgctaagataagaagcaattgtcaagattgaaggtctagcctct |
21967668 |
T |
|
| Q |
169 |
gggtcattttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaaggtg |
268 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
21967669 |
ggatcattttgaacacataatagaccaatctgaatgcacttaatgacttcagttttagaaaaatctcctttaatatttgggtccaatatatttaaaggtg |
21967768 |
T |
|
| Q |
269 |
tttgatccatccactgtctccatacctgaaa |
299 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |
|
|
| T |
21967769 |
ttttatccatccactgtctccacacctgaaa |
21967799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 20233861 - 20233743
Alignment:
| Q |
178 |
tgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatctt-ttttaatatttgggtccaatatacttaaaggtgtttgatcc |
276 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||| |||||| || ||||| ||||| ||||||||||||||| ||||| ||||| ||| ||| |||| |
|
|
| T |
20233861 |
tgaacgcataataaaccaatctgaatgcatttaattacttcaatttcagaat-atcttcctttaatatttgggtctaatatgcttaatggtatttcatcc |
20233763 |
T |
|
| Q |
277 |
atccactgtctccatacctg |
296 |
Q |
| |
|
|||| ||| |||| ||||| |
|
|
| T |
20233762 |
ctccattgtttccaaacctg |
20233743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 22127845 - 22127727
Alignment:
| Q |
178 |
tgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatctt-ttttaatatttgggtccaatatacttaaaggtgtttgatcc |
276 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||| |||||| || ||||| ||||| ||||||||||||||| ||||| ||||| ||| ||| |||| |
|
|
| T |
22127845 |
tgaacgcataataaaccaatctgaatgcatttaattacttcaatttcagaat-atcttcctttaatatttgggtctaatatgcttaatggtatttcatcc |
22127747 |
T |
|
| Q |
277 |
atccactgtctccatacctg |
296 |
Q |
| |
|
|||| ||| |||| ||||| |
|
|
| T |
22127746 |
ctccattgtttccaaacctg |
22127727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 50534 - 50166
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50534 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttttggagttggtaattcaatt |
50435 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50434 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
50335 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
50334 |
catttgtagaataatcttctttaatatttgggtccaaaatacttataggtgtttgatccatccactgtctccatacctgaaataatgtgtgaaatccaat |
50235 |
T |
|
| Q |
318 |
ttctcaactaatatccaggtcgcatgtgatatatttaagtgcaaataatatatatttcttctcactcga |
386 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||| | |||||| |
|
|
| T |
50234 |
ttctcaacaaatatccaggtggcatgtgatatattcaagagcaaataatatatatttcttgtaactcga |
50166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 14760 - 15128
Alignment:
| Q |
18 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagagaaacgcaggttcttttggagttggtaattcaatt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |
|
|
| T |
14760 |
attggcagattgagtagaacttgattcttgtgcaagaacgtcggaataagttctaccatgcaagaaaaacgcaggttcttgtggagttggtaaatcaatt |
14859 |
T |
|
| Q |
118 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataacagaccaatctgaatgcatttaatgactt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
14860 |
gcataactgctaagataagaagcaactgtcacaattgaaggtctagcattcgggtcattttgaacacataatagaccaatctgaatgcacttaatgactt |
14959 |
T |
|
| Q |
218 |
catttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatccatccactgtctccatacctgaaataatgtatgaaatccaat |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |
|
|
| T |
14960 |
catttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatccatccattgtctccatacctgaaataatgtgtgaaatccgat |
15059 |
T |
|
| Q |
318 |
ttctcaactaatatccaggtcgcatgtgatatatttaagtgcaaataatatatatttcttctcactcga |
386 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
15060 |
ttctcaactaatatccaggtcgtatgtgatttattcaagtgcaaataatatatatttcttgtaactcga |
15128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 10401126 - 10401245
Alignment:
| Q |
177 |
ttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatcc |
276 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||| |||| | ||||||| | |||||||||| |||||||||||||||| | | ||||||| |
|
|
| T |
10401126 |
ttgaacacataataaaccaatctgaatgcatttgatgacctcatattcagaataagttcctttaatattttggtccaatatacttaatgttatttgatca |
10401225 |
T |
|
| Q |
277 |
atccactgtctccatacctg |
296 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
10401226 |
ctccattgtctccaaacctg |
10401245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 296
Target Start/End: Complemental strand, 47593996 - 47593880
Alignment:
| Q |
177 |
ttgaacacataacagaccaatctgaatgcatttaatgacttcatttgtagaataatcttttttaatatttgggtccaatatacttaaaggtgtttgatcc |
276 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||| |||||| | ||||||| |||| ||| ||||| |||||||| |||| || |||| || | |
|
|
| T |
47593996 |
ttgaacacataacaaaccaatctgtatgcacttaataacttcaatacgagaataa---ttttcaatttttggatccaatatgattaatggagtttcattc |
47593900 |
T |
|
| Q |
277 |
atccactgtctccatacctg |
296 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
47593899 |
ttccattgtctccatacctg |
47593880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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