View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_13 (Length: 383)
Name: NF14419_low_13
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 51 - 292
Target Start/End: Complemental strand, 17950286 - 17950037
Alignment:
| Q |
51 |
catgatccattttaatagagaggttatcggtagaattaagggcatgtttgttataaatttcaaaaatgattttttcgtccattaatttaaagatcattca |
150 |
Q |
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| T |
17950286 |
catgatccattttaatagagaggttatcggtagaattaagggcatgtttgttataaatttaaaaaatgattttttcgttcattaatttaaagatcattca |
17950187 |
T |
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| Q |
151 |
ataaaaatcactttttcacaacaaa--------taaaaaattcaacttatttgggtacaactctataaaattgaaacttattttacaaacttatttcccc |
242 |
Q |
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| T |
17950186 |
ataaaaatcacttttttacaacaaaaaaaaaggtaaaaaattcaacttgtttgggtacaactctataaaattgaaacttattttacaaacttatttcccc |
17950087 |
T |
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| Q |
243 |
ttttgacacttatgttttctctcccctaaacaaaaataatgtttggaatc |
292 |
Q |
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| T |
17950086 |
ttttgacacttatgttttctctcccctaaacaaaattaatgtttggaatc |
17950037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 17949994 - 17949930
Alignment:
| Q |
299 |
tttttagatttcaatttgtataaaattgcaacaaacatacgtcattatcttaaggcttaattaag |
363 |
Q |
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| T |
17949994 |
tttttagatttcaatttgtataaaattgcaacaaatatacgtcattatcttaaggcttaattaag |
17949930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 285
Target Start/End: Complemental strand, 19325421 - 19325275
Alignment:
| Q |
143 |
atcattcaataaaaatcactttttcacaacaaa-----taaaaaattcaacttatttgggtacaactctataaaattgaaacttat-tttacaaacttat |
236 |
Q |
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| T |
19325421 |
atcattcaataaaaatcacttttttgcaacaaaaaaagtaaaaaattcaacttgttggggcactactctataaa-ttgaaatatttgtttacaaacttat |
19325323 |
T |
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| Q |
237 |
ttccccttttgacacttatgttttctctcccctaaacaaaaataatgtt |
285 |
Q |
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| T |
19325322 |
c-ccccttttgacacttatgttttctctcctctaaacaaaattaatgtt |
19325275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 19325221 - 19325160
Alignment:
| Q |
302 |
ttagatttcaatttgtataaaattgcaacaaacatacgtcattatcttaaggcttaattaag |
363 |
Q |
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| T |
19325221 |
ttagatttcaattttaaaaaaattgtaacaaacatacgtcattatcttaacggttaattaag |
19325160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 17976243 - 17976309
Alignment:
| Q |
51 |
catgatccattttaatagagaggttatcggtagaattaagggcatgtttgttataaatttcaaaaat |
117 |
Q |
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| T |
17976243 |
catgattcattttaatatagacgttatcggtagaattaacaacaagtttgttatgaatttaaaaaat |
17976309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 17976387 - 17976425
Alignment:
| Q |
178 |
aaaaattcaacttatttgggtacaactctataaaattga |
216 |
Q |
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| T |
17976387 |
aaaaattcaacttgtttgtgtacaactctataaaattga |
17976425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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