View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14419_low_18 (Length: 357)
Name: NF14419_low_18
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_18 |
 | |
|
| [»] scaffold0016 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 33 - 353
Target Start/End: Complemental strand, 33675204 - 33674883
Alignment:
| Q |
33 |
gctcatgaagaaaaagtaagtgtactatttttctgacaaggtaaaaaacagtgatataactgaatttgtatgtatggttatggcagtcaatgctcataca |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33675204 |
gctcatgaagaaaaagtaagtgtactattttactgacaaggtaaaaaacagtgatataactgaatttgtaagtatggttatggcagtcaatgctcataca |
33675105 |
T |
|
| Q |
133 |
ttggaaaagttgaacttttaagttagtgttgttatcttttgaattg-nnnnnnnacaggtagtgttgttatctttttagaaacgattaattataaattta |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33675104 |
ttggaaaagttgaacttttaagttagtgttgttatcttttgaattgttttttgtactggtagtgttgttatctttttagaaacgattaattataatttta |
33675005 |
T |
|
| Q |
232 |
tcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactcgcctaacacaaacacaaaccatatca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
33675004 |
tcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcacaaacacaaaccatatca |
33674905 |
T |
|
| Q |
332 |
cgatcatattacacacgttcac |
353 |
Q |
| |
|
| ||| || ||| |||||||| |
|
|
| T |
33674904 |
caatccaatcacatacgttcac |
33674883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 115 - 357
Target Start/End: Complemental strand, 33664509 - 33664267
Alignment:
| Q |
115 |
gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaac |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
33664509 |
gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgtttctttttttgacaggtagtgttgttatctttttagaaac |
33664410 |
T |
|
| Q |
215 |
gattaattataaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactcgcctaacac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
33664409 |
gattaattataaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcac |
33664310 |
T |
|
| Q |
315 |
aaacacaaaccatatcacgatcatattacacacgttcacacat |
357 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
33664309 |
aaacacaaaccatatcacaatccaattacacacgttcacacat |
33664267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 115 - 353
Target Start/End: Complemental strand, 33686311 - 33686073
Alignment:
| Q |
115 |
gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaac |
214 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
33686311 |
gcagtcattgctcatacattgaaaaagttgaacttttaagtaagtgttgttctcttttgtttctttttttggcaggtagtgttgttatctttttagaaac |
33686212 |
T |
|
| Q |
215 |
gattaattataaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactcgcctaacac |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
33686211 |
gattaattataaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcac |
33686112 |
T |
|
| Q |
315 |
aaacacaaaccatatcacgatcatattacacacgttcac |
353 |
Q |
| |
|
|||||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
33686111 |
aaacacaaaccatatcacaatccaatcacatacgttcac |
33686073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 33693449 - 33693394
Alignment:
| Q |
117 |
agtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatctttt |
172 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
33693449 |
agtcaatgctcattcattgcaaaagttgaacttttaaggtagtgtggttatctttt |
33693394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 33693413 - 33693360
Alignment:
| Q |
188 |
aggtagtgttgttatctttttagaaacgattaattataaatttatcataatcta |
241 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
33693413 |
aggtagtgtggttatctttttagaaacacttaattttaaatttattataatcta |
33693360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 33686435 - 33686390
Alignment:
| Q |
33 |
gctcatgaagaaaaagtaagtgtactatttttctgacaaggtaaaaa |
79 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
33686435 |
gctcatgaagaaaaagga-gtgtactatttttctaacaaggtaaaaa |
33686390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 115 - 332
Target Start/End: Original strand, 102922 - 103139
Alignment:
| Q |
115 |
gcagtcaatgctcatacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || |
|
|
| T |
102922 |
gcagtcaatgctcatacattggaaaagttgaaactttaagttagtgttgttatattttg--tttttttttgacaggtagtgttgttatctttttagagac |
103019 |
T |
|
| Q |
215 |
gattaattat---aaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactcgcctaa |
311 |
Q |
| |
|
| |||||||| |||||||| |||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
103020 |
gcttaattattataaatttataataatcta-tttcttaatgaatagttataatttgtaattggaacccctttatataccacctaaccccaactctcctat |
103118 |
T |
|
| Q |
312 |
cacaaacacaaaccatatcac |
332 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
103119 |
cacaaacacaaaccatatcac |
103139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 86367 - 86432
Alignment:
| Q |
200 |
tatctttttagaaacgattaattataaatttatcataatctaatttcttagtggataattataatt |
265 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| |||||||||| |||| ||||| ||||||||| |
|
|
| T |
86367 |
tatctttttagaaaagcttaattataaatttatactaatctaattacttaatggatgattataatt |
86432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 86319 - 86362
Alignment:
| Q |
119 |
tcaatgctcatacattggaaaagttgaacttttaagttagtgtt |
162 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
86319 |
tcaatgctcattcattggaaaagttgaacttttaaattagtgtt |
86362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University