View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14419_low_20 (Length: 354)

Name: NF14419_low_20
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14419_low_20
NF14419_low_20
[»] chr1 (10 HSPs)
chr1 (16-286)||(32914654-32914922)
chr1 (233-286)||(29302059-29302112)
chr1 (233-286)||(29302157-29302210)
chr1 (243-286)||(11989401-11989444)
chr1 (233-286)||(47681-47734)
chr1 (233-286)||(47778-47831)
chr1 (243-284)||(9902661-9902702)
chr1 (233-286)||(35156260-35156313)
chr1 (233-286)||(39075844-39075897)
chr1 (233-286)||(39076000-39076053)
[»] chr7 (14 HSPs)
chr7 (232-286)||(8571474-8571528)
chr7 (233-286)||(28285481-28285534)
chr7 (233-286)||(2297326-2297379)
chr7 (233-286)||(2360444-2360497)
chr7 (233-286)||(8595239-8595292)
chr7 (233-286)||(26825010-26825063)
chr7 (233-286)||(46648340-46648393)
chr7 (232-283)||(10422802-10422853)
chr7 (233-286)||(8571377-8571430)
chr7 (233-286)||(10422900-10422953)
chr7 (233-286)||(12171237-12171290)
chr7 (233-282)||(2360545-2360594)
chr7 (233-286)||(26824901-26824954)
chr7 (233-282)||(46648723-46648772)
[»] chr5 (7 HSPs)
chr5 (244-286)||(39035479-39035521)
chr5 (233-286)||(1996842-1996895)
chr5 (233-286)||(1996940-1996993)
chr5 (233-286)||(25772149-25772202)
chr5 (233-286)||(20019840-20019893)
chr5 (233-286)||(25772247-25772300)
chr5 (233-286)||(27314470-27314523)
[»] chr8 (7 HSPs)
chr8 (233-286)||(17087350-17087403)
chr8 (233-286)||(42749050-42749103)
chr8 (235-286)||(17087439-17087490)
chr8 (238-286)||(13029406-13029454)
chr8 (242-286)||(9232537-9232582)
chr8 (238-286)||(9879007-9879055)
chr8 (250-286)||(13029339-13029375)
[»] chr2 (2 HSPs)
chr2 (233-278)||(25899833-25899878)
chr2 (245-286)||(23992382-23992423)
[»] chr4 (5 HSPs)
chr4 (233-286)||(28702056-28702109)
chr4 (243-286)||(21859487-21859530)
chr4 (243-286)||(21915350-21915393)
chr4 (243-286)||(34134595-34134638)
chr4 (233-286)||(28702153-28702206)
[»] chr3 (5 HSPs)
chr3 (233-286)||(22456272-22456325)
chr3 (233-286)||(26143540-26143593)
chr3 (233-286)||(40470510-40470563)
chr3 (231-286)||(34063748-34063803)
chr3 (243-286)||(40470423-40470466)
[»] scaffold0536 (1 HSPs)
scaffold0536 (228-284)||(4044-4100)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 32914922 - 32914654
Alignment:
Q  16 attccatagactactgctttctttgccaaatcatcaacgttgccacctcatttttagtatgtcttggtctacccatccctaggtttgtccctttggtagg 115  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  32914922 attccatagactactgctttctttgccaagtcatcaacgttgccacctcattttcagtatgtcttggtctaccgatccctaggtttgtccctttggtagg 32914823  T
Q  116 aacaagatttcataagcatgtggatggatggaactatataaaaatctttattaaagaaaggaagttggtaatcgttgccccgagtgagtatcggttaaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||||    
T  32914822 aacaagatttcataagcatgtggatggatggaactatataaaaatctttattaaagaaa-gaaattggtaatcgttg-cccgagtgagtaccggttaaat 32914725  T
Q  216 atattaaaaaagaaagttacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||||||||||||||||||||||| | ||| |||||||| ||||||||| ||||||| |||||||||||    
T  32914724 atattaaaaaagaaagttacatcctccgatcatcaatataaacaaaaatttaatttttagattcattcatt 32914654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 29302059 - 29302112
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  29302059 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcatt 29302112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 29302210 - 29302157
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  29302210 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcatt 29302157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 11989444 - 11989401
Alignment:
Q  243 ggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  11989444 ggtcactaatataagcaaaagtttgatttttagattcattcatt 11989401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 47681 - 47734
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| |||||||| |||| ||||||||||| |||||||||||    
T  47681 tacaccctccggtcactaatataagtaaaattttgatttttagattcattcatt 47734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 47831 - 47778
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||  ||||||||||||| ||||||||||| |||||||||||    
T  47831 tacaccctccggtcattaatataagcaaaactttgatttttagattcattcatt 47778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 9902702 - 9902661
Alignment:
Q  243 ggtcaccaatataagcaaaaatttgatttttaaattcattca 284  Q
    |||||| | ||||||||||||||||||||||||| |||||||    
T  9902702 ggtcactactataagcaaaaatttgatttttaaagtcattca 9902661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 35156260 - 35156313
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||| ||||||||| ||||||| |||||||||||    
T  35156260 tacaccctccggtcactaatataaacaaaaattttatttttagattcattcatt 35156313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 39075844 - 39075897
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| ||||||||||| | ||||||||||| ||||| ||||| |||||||||||    
T  39075844 tacaccctctggtcactagtataagcaaaagtttgaattttagattcattcatt 39075897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 39076053 - 39076000
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||||||| |||||| | ||||||||||| ||||| ||||| |||||||||||    
T  39076053 tacatcctcgggtcactagtataagcaaaagtttgaattttagattcattcatt 39076000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 8571528 - 8571474
Alignment:
Q  232 ttacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  8571528 ttacaccctccggtcactaatataagcaaaaatttgatttttaaattcattcatt 8571474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 28285534 - 28285481
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  28285534 tacatcctccggtcattaatataagcaaaaatttgatttttaaattcattcatt 28285481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 2297326 - 2297379
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  2297326 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcatt 2297379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 2360444 - 2360497
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  2360444 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcatt 2360497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 8595292 - 8595239
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| |||||||||||||||||||||||| ||||||||||||    
T  8595292 tacaccctccggtcactaatataagcaaaaatttgatttttgaattcattcatt 8595239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 26825063 - 26825010
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||||||| | |||| |||||||| ||||||||||||||||||||||||||||    
T  26825063 tacatcctccgatcactaatataagtaaaaatttgatttttaaattcattcatt 26825010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 46648340 - 46648393
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||||||  ||||| ||||||||||||||||||||||||| |||||||||||    
T  46648340 tacatcctcctgtcactaatataagcaaaaatttgatttttagattcattcatt 46648393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 10422802 - 10422853
Alignment:
Q  232 ttacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattc 283  Q
    |||||||||| |||||| ||||||||||||||||| ||||||| ||||||||    
T  10422802 ttacatcctccggtcactaatataagcaaaaatttaatttttagattcattc 10422853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 8571377 - 8571430
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  8571377 tacaccctccggtcactaatataagcaaaagtttgatttttagattcattcatt 8571430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 10422953 - 10422900
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||| ||||||| |||||||||||    
T  10422953 tacaccctccggtcactaatataagcaaaaatttaatttttagattcattcatt 10422900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 12171237 - 12171290
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||  ||||||||||||||||||||||||| |||||||||||    
T  12171237 tacaccctccggtcattaatataagcaaaaatttgatttttagattcattcatt 12171290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 2360594 - 2360545
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcatt 282  Q
    |||| |||| |||||| |||||||| |||||||||||||||| |||||||    
T  2360594 tacaccctccggtcactaatataaggaaaaatttgatttttagattcatt 2360545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 26824901 - 26824954
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| | ||||||||||||||| ||||||| |||||||||||    
T  26824901 tacaccctccggtcactagtataagcaaaaatttaatttttagattcattcatt 26824954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 46648772 - 46648723
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcatt 282  Q
    |||| |||| |||||| ||||||||||||| ||||||||||| |||||||    
T  46648772 tacaccctccggtcactaatataagcaaaattttgatttttagattcatt 46648723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 39035521 - 39035479
Alignment:
Q  244 gtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  39035521 gtcactaatataagcaaaaatttgatttttaaattcattcatt 39035479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 1996842 - 1996895
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  1996842 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcatt 1996895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 1996993 - 1996940
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  1996993 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcatt 1996940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 25772149 - 25772202
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  25772149 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcatt 25772202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 20019893 - 20019840
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  20019893 tacaccctccggtcactaatataagcaaaagtttgatttttagattcattcatt 20019840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 25772300 - 25772247
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  25772300 tacaccctccggtcactaatataagcaaaagtttgatttttagattcattcatt 25772247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 27314470 - 27314523
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| |||||||||||||||||| |||||| |||||||||||    
T  27314470 tacaccctccggtcactaatataagcaaaaatttggtttttagattcattcatt 27314523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 17087350 - 17087403
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  17087350 tacatcctccggtcactaatataagcaaaagtttgatttttagattcattcatt 17087403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 42749050 - 42749103
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  42749050 tacatcctccggtcactaatataagcaaaagtttgatttttagattcattcatt 42749103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 17087490 - 17087439
Alignment:
Q  235 catcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  17087490 catcctccggtcactaatataagcaaaagtttgatttttagattcattcatt 17087439  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 13029454 - 13029406
Alignment:
Q  238 cctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  13029454 cctccggtcactaatataagcaaaagtttgatttttagattcattcatt 13029406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 9232537 - 9232582
Alignment:
Q  242 tggtcaccaatataagcaaaaatttgattttta-aattcattcatt 286  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  9232537 tggtcactaatataagcaaaagtttgatttttagaattcattcatt 9232582  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 9879055 - 9879007
Alignment:
Q  238 cctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||||| ||||||||||||  ||||||||||| |||||||||||    
T  9879055 cctccggtcactaatataagcaaacgtttgatttttagattcattcatt 9879007  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 13029339 - 13029375
Alignment:
Q  250 aatataagcaaaaatttgatttttaaattcattcatt 286  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  13029339 aatataagcaaaagtttgatttttagattcattcatt 13029375  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 25899833 - 25899878
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaatt 278  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  25899833 tacatcctctgatcactaatataagcaaaaatttgatttttaaatt 25899878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 23992382 - 23992423
Alignment:
Q  245 tcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| ||||||| ||||| |||||||||||||||||||||||    
T  23992382 tcactaatataaacaaaagtttgatttttaaattcattcatt 23992423  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 28702056 - 28702109
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  28702056 tacaccctccggtcactaatataagcaaaagtttgatttttagattcattcatt 28702109  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 21859487 - 21859530
Alignment:
Q  243 ggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||    
T  21859487 ggtcactaatataaacaaaaatttgatttttagattcattcatt 21859530  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 21915350 - 21915393
Alignment:
Q  243 ggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||| ||||||| ||||||||||||||||| |||||||||||    
T  21915350 ggtcactaatataaacaaaaatttgatttttagattcattcatt 21915393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 34134638 - 34134595
Alignment:
Q  243 ggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||| |||||||| |||||||||||||||| |||||||||||    
T  34134638 ggtcactaatataagtaaaaatttgatttttagattcattcatt 34134595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 28702206 - 28702153
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||| |||||||||||  ||||||||||    
T  28702206 tacaccctccggtcactaatataagcaaaagtttgatttttaggttcattcatt 28702153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 22456325 - 22456272
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||| ||||||||||||||||||| |||||||||||    
T  22456325 tacaccctccggtcactaatatcagcaaaaatttgatttttagattcattcatt 22456272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 26143593 - 26143540
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||| ||||| |||||||||||||||||||||||    
T  26143593 tacaccctccggtcactaatataaacaaaagtttgatttttaaattcattcatt 26143540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 40470563 - 40470510
Alignment:
Q  233 tacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||| |||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  40470563 tacaccctccggtcactaatataagcaaaagtttgatttttagattcattcatt 40470510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 34063748 - 34063803
Alignment:
Q  231 gttacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||||| ||  ||||| |||||||||||||||||| |||||||||| |||||||    
T  34063748 gttacatcttccagtcactaatataagcaaaaatttgttttttaaatttattcatt 34063803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 40470423 - 40470466
Alignment:
Q  243 ggtcaccaatataagcaaaaatttgatttttaaattcattcatt 286  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||    
T  40470423 ggtcactaatataagcaaaaatttaatttttagattcattcatt 40470466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 4100 - 4044
Alignment:
Q  228 aaagttacatcctctggtcaccaatataagcaaaaatttgatttttaaattcattca 284  Q
    |||| |||| ||||||||||| |||||||||||||||||  |||||| || ||||||    
T  4100 aaagctacaccctctggtcactaatataagcaaaaatttactttttagatacattca 4044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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