View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_21 (Length: 337)
Name: NF14419_low_21
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_21 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 33664304 - 33664005
Alignment:
| Q |
19 |
caaaccatatcacaatcatattacacacgttcacacattctcattctctctctcaacaaaacnnnnnnncactcacaaactcatcaaaccgttacaacaa |
118 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
33664304 |
caaaccatatcacaatccaattacacacgttcacacattctcattctctctctcaacaaaacaaaaa--cactcacaaacttatcaaaccgttacaacaa |
33664207 |
T |
|
| Q |
119 |
tggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgttaacaaaaaacatagccaaaagcaa |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
33664206 |
tggaaattgaaacaaaccaaacaatggtagttacaaagaaagtatggaacacactacgtataattttcttcatgtttacaaaaaacattgccaaaagcaa |
33664107 |
T |
|
| Q |
219 |
aatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacagtctaactctccgccaccactcgtccgcctcc |
318 |
Q |
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|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||||| |
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| T |
33664106 |
aatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacactctagctctccgccaccactcgactgcctcc |
33664007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 88 - 320
Target Start/End: Complemental strand, 33686027 - 33685795
Alignment:
| Q |
88 |
cactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33686027 |
cactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
33685928 |
T |
|
| Q |
188 |
tcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacag |
287 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33685927 |
tcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagccatagccaacac |
33685828 |
T |
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| Q |
288 |
tctaactctccgccaccactcgtccgcctcctt |
320 |
Q |
| |
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|||| ||||||||||||||||| | |||||||| |
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| T |
33685827 |
tctagctctccgccaccactcgactgcctcctt |
33685795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 88 - 320
Target Start/End: Complemental strand, 33674837 - 33674605
Alignment:
| Q |
88 |
cactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674837 |
cactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
33674738 |
T |
|
| Q |
188 |
tcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacag |
287 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
33674737 |
tcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaatttaatctcttgctaaaacgtagcaaactcgccgccatcaaagctatagccaacac |
33674638 |
T |
|
| Q |
288 |
tctaactctccgccaccactcgtccgcctcctt |
320 |
Q |
| |
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||| |||||||||||||||||||| ||||||| |
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| T |
33674637 |
tctcactctccgccaccactcgtcttcctcctt |
33674605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 117 - 322
Target Start/End: Complemental strand, 33693225 - 33693020
Alignment:
| Q |
117 |
aatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgttaacaaaaaacatagccaaaagc |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
33693225 |
aatggatattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaaacattgccaaaagc |
33693126 |
T |
|
| Q |
217 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacagtctaactctccgccaccactcgtccgcct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
33693125 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgctatcaaagccatagccaacactctcactctccgccaccactcgtccgcct |
33693026 |
T |
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| Q |
317 |
cctttg |
322 |
Q |
| |
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|||||| |
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| T |
33693025 |
cctttg |
33693020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 95 - 320
Target Start/End: Original strand, 86524 - 86756
Alignment:
| Q |
95 |
aaactcatcaaaccgttacaacaa-------tggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgt |
187 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
86524 |
aaactcatcaaaccgttacaacaaacaagaatggaaattgaaacaaaccaactaattatagtaacaaagaaagtatggaacacactgcgtataattttgt |
86623 |
T |
|
| Q |
188 |
tcatgttaacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacag |
287 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
86624 |
tcatgttaacaaaaaacatagctaaaagcaaaatggtagcagaattaaatctcttgctaaaacgtagcaaactcgccgccatcaaagccatagccaacac |
86723 |
T |
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| Q |
288 |
tctaactctccgccaccactcgtccgcctcctt |
320 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
86724 |
tctagctctccgccaccactcgtccgcctcctt |
86756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 94 - 320
Target Start/End: Original strand, 103199 - 103425
Alignment:
| Q |
94 |
caaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgt |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
103199 |
caaactcatcaaaccgttacaacaatggaaattgaaacaacccaaccaatgatagtaacaaagaaagtatggaacacactacgtctaattttgttaatgt |
103298 |
T |
|
| Q |
194 |
taacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgccatcaaagccatagccaacagtctaac |
293 |
Q |
| |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||| || |
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| T |
103299 |
taaaaaaaaacatagccaaaagcaaaaaggtagcacaattaaatctcttgctaaaacgtagcaagctcgccgctatcaaagccatagccaaccctctcac |
103398 |
T |
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| Q |
294 |
tctccgccaccactcgtccgcctcctt |
320 |
Q |
| |
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|||||||||||| || ||||||||| |
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| T |
103399 |
cctccgccaccacctgttcgcctcctt |
103425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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