View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_22 (Length: 332)
Name: NF14419_low_22
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 40 - 327
Target Start/End: Complemental strand, 1404437 - 1404150
Alignment:
| Q |
40 |
tatatgtctcgaggttacaaggtcgaactcttaccataaagttgacacctcatcgacaaaataatcagttaactataagggagaggaaagacaatccgaa |
139 |
Q |
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| T |
1404437 |
tatatgtctcgaggttacaaggtcgaactcttaccacaaagttgacacctcatcgacaaaataatcagttaactataagggagaggaaagacaatccgaa |
1404338 |
T |
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| Q |
140 |
tacataattcgagccaatgactattcccgtcccttttggtatttattttgctgaatttcatatatattatttgcagaaattgatgccttattgatacata |
239 |
Q |
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| T |
1404337 |
tacataattcgagccaatgactattcccttcccttttggtatttattttgctgaatttcatatatattatttgcagaaattgatgccttattgatacata |
1404238 |
T |
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| Q |
240 |
ggctgcttctgtaattgtctagaactccatgtactgattaaaggtgaacttggaaaaataattgttggaagtctctcatattcttcga |
327 |
Q |
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| T |
1404237 |
ggctgcttctgtaattgtctagaactccatgtactgattaaaggtgaacttggaaaaataattgttggaagtctctcactttcttcga |
1404150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 7255872 - 7255991
Alignment:
| Q |
42 |
tatgtctcgaggttacaaggtcgaactcttacca----taaagttgacacctcatcgacaaaataatcagttaactataagggagaggaaagacaatccg |
137 |
Q |
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|||||||||||||||||||||| |||| |||||| | |||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
7255872 |
tatgtctcgaggttacaaggtcaaacttttaccaaccattgagttgaaaccttatcgacaaaataatcagttaattataaggaagaggaaagacaatccg |
7255971 |
T |
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| Q |
138 |
aatacataattcgagccaat |
157 |
Q |
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| T |
7255972 |
aatacataattcgacccaat |
7255991 |
T |
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