View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_24 (Length: 287)
Name: NF14419_low_24
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 3038561 - 3038402
Alignment:
| Q |
15 |
tatcaaatagagaaggtccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataactaccaataccataatttgttggggaaggag |
114 |
Q |
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| T |
3038561 |
tatcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataact------accataatttgttggggaaggag |
3038468 |
T |
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| Q |
115 |
gagctgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattccgatg |
180 |
Q |
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| T |
3038467 |
gagctgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatg |
3038402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 3021690 - 3021533
Alignment:
| Q |
17 |
tcaaatagagaaggtccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataactaccaataccataatttgttggggaaggagga |
116 |
Q |
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| T |
3021690 |
tcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataact------accataatttgttggggaaggagga |
3021597 |
T |
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| Q |
117 |
gctgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattccgatg |
180 |
Q |
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| T |
3021596 |
gctgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatg |
3021533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 3021447 - 3021384
Alignment:
| Q |
224 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttatctccaccgcatca |
287 |
Q |
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| T |
3021447 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttatctccgtcgcatca |
3021384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 3038316 - 3038253
Alignment:
| Q |
224 |
cttgtcctcaaccgcaaacaactgagctgcctccatcgccgctctccttatctccaccgcatca |
287 |
Q |
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| T |
3038316 |
cttgtcttcaaccgcaaacaactgagcagcctccatcgccgccctccttatctccgtcgcatca |
3038253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 3030633 - 3030598
Alignment:
| Q |
252 |
gcctccatcgccgctctccttatctccaccgcatca |
287 |
Q |
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| T |
3030633 |
gcctccatcgcagctctccttatctccaccgcatca |
3030598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 32752584 - 32752507
Alignment:
| Q |
98 |
atttgttggggaaggaggagctgaacgtaaaggctcgtttgcaatttttagaagcaaatcatgcatgccttcaaattc |
175 |
Q |
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| T |
32752584 |
atttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaatcatgcatgtcttccaattc |
32752507 |
T |
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