View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_25 (Length: 242)
Name: NF14419_low_25
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 24724490 - 24724260
Alignment:
| Q |
1 |
ttacaatatccaaccacattgtctaattaatctaatgttgttcatacaggatatgatcgatatatatgatattccatccagaggtcattgctgaattttg |
100 |
Q |
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| T |
24724490 |
ttacaatatccaaccacattgtctaattaatctaatgttgttcatacaggatatgatcgatatatatgatattccatccagaggtcattgctgaattttg |
24724391 |
T |
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| Q |
101 |
cacaaattactgtaaagcaaattaatgtgtactgttcctnnnnnnnnnnnnnnnnntatagagctactggtatatatacacattattgttgtttaatagt |
200 |
Q |
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| T |
24724390 |
cataaattactgcaaagcaaattaatgtgtactgttcctaaaaaataaataaaaaatatagggctactggtatatatacacattattgttgtttaatagt |
24724291 |
T |
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| Q |
201 |
gagcaagattttgcttctcttagaagaaact |
231 |
Q |
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| T |
24724290 |
gagcaagattttgcttctcttagtagaaact |
24724260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 21132387 - 21132251
Alignment:
| Q |
1 |
ttacaatatccaaccacattgtctaattaatctaatgttgttcatacaggatatgatcgatatatatgatattccatccagaggtcattgctgaattttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21132387 |
ttacaatatccaaccacattgtctaattaatctaatgttgttcatacaggatatgatcgatatatatgatattccatccagaggtcattgctgaattttg |
21132288 |
T |
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| Q |
101 |
cacaaattactgtaaagcaaattaatgtgtactgttc |
137 |
Q |
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| T |
21132287 |
cacaaattactggaaagcaaattaatgtgtactgttc |
21132251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 21132188 - 21132128
Alignment:
| Q |
171 |
tatatatacacattattgttgtttaatagtgagcaagattttgcttctcttagaagaaact |
231 |
Q |
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| T |
21132188 |
tatatatatacattattgttgtttaatagtgagcaagattttgcttctcttagtagaaact |
21132128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 49581247 - 49581180
Alignment:
| Q |
64 |
atatgatattccatccagaggtcattgctgaattttgcacaaattactgtaaagcaaattaatgtgta |
131 |
Q |
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| T |
49581247 |
atatgatattccatcgagtggtcattgctgaattttgtagaaattactgcaaaggtcattaatgtgta |
49581180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 49581121 - 49581068
Alignment:
| Q |
175 |
tatacacattattgttgtttaatagtgagcaagattttgcttctcttagaagaa |
228 |
Q |
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| T |
49581121 |
tatatacattgttgttgtttaatagtgagaaagattttgcttctcctagtagaa |
49581068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 49581277 - 49581241
Alignment:
| Q |
21 |
gtctaattaatctaatgttgttcatacaggatatgat |
57 |
Q |
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| T |
49581277 |
gtctaattaacctaatcttgttcatacaggatatgat |
49581241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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