View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_28 (Length: 227)
Name: NF14419_low_28
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17977049 - 17976840
Alignment:
| Q |
1 |
ccaaaactatattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgacagttccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||| |||| ||||||| |||||| |
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| T |
17977049 |
ccaaaactatattctcatgtttactacttcccattagggcacttagaacacatatgtccatccccaaaccctaacacactgtcccatcttgaccgttccc |
17976950 |
T |
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| Q |
101 |
gtccattcattctctgcacagtctccgcggttgatctactcgctgaccgttgtaccgatgaagtcttcgtcaaactactcctcactcctgtcactaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17976949 |
gtccattcattctctgcacagtctccgcggttgatctactcgctgacctttgtaccgatgaagtcttcgtcaaactactcctcactcctgtcactaacaa |
17976850 |
T |
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| Q |
201 |
aggtgttcac |
210 |
Q |
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|||||||||| |
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| T |
17976849 |
aggtgttcac |
17976840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 17914113 - 17914302
Alignment:
| Q |
1 |
ccaaaactatattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgacagttccc |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17914113 |
ccaaaactaaattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgaccgttccc |
17914212 |
T |
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| Q |
101 |
gtccattcattctctgcacagtctccgcggttgatctactcgctgaccgttgtaccgatgaagtcttcgtcaaactactcctcactcctg |
190 |
Q |
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||| |||||||| |||||| |||||| ||||| ||||||||||||||| | |||||||||||| ||||||||| |||| |||||||||| |
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| T |
17914213 |
gtcaattcattccctgcaccgtctccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctg |
17914302 |
T |
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