View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_29 (Length: 227)
Name: NF14419_low_29
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 17977045 - 17976840
Alignment:
| Q |
5 |
aactatattctcaggtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgacagttcccgtcc |
104 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||| |||| ||||||| |||||||||| |
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| T |
17977045 |
aactatattctcatgtttactacttcccattagggcacttagaacacatatgtccatccccaaaccctaacacactgtcccatcttgaccgttcccgtcc |
17976946 |
T |
|
| Q |
105 |
attcattctctgcacagtctccgcggttgatctactcgctgaccgttgtaccgatgaagtcttcgtcaaactactcctcactcctgtcactaacaaaggt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17976945 |
attcattctctgcacagtctccgcggttgatctactcgctgacctttgtaccgatgaagtcttcgtcaaactactcctcactcctgtcactaacaaaggt |
17976846 |
T |
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| Q |
205 |
gttcac |
210 |
Q |
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|||||| |
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| T |
17976845 |
gttcac |
17976840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 17914117 - 17914302
Alignment:
| Q |
5 |
aactatattctcaggtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgacagttcccgtcc |
104 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17914117 |
aactaaattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgaccgttcccgtca |
17914216 |
T |
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| Q |
105 |
attcattctctgcacagtctccgcggttgatctactcgctgaccgttgtaccgatgaagtcttcgtcaaactactcctcactcctg |
190 |
Q |
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|||||||| |||||| |||||| ||||| ||||||||||||||| | |||||||||||| ||||||||| |||| |||||||||| |
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| T |
17914217 |
attcattccctgcaccgtctccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctg |
17914302 |
T |
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