View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14419_low_3 (Length: 576)

Name: NF14419_low_3
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14419_low_3
NF14419_low_3
[»] chr5 (25 HSPs)
chr5 (19-571)||(37869370-37869922)
chr5 (101-260)||(21144023-21144181)
chr5 (91-260)||(20355146-20355314)
chr5 (132-260)||(13153599-13153726)
chr5 (140-324)||(15399611-15399797)
chr5 (91-221)||(42778936-42779064)
chr5 (152-260)||(17668743-17668850)
chr5 (177-242)||(20628040-20628105)
chr5 (177-241)||(31567818-31567882)
chr5 (182-237)||(38082947-38083002)
chr5 (143-244)||(35687296-35687402)
chr5 (206-240)||(38083061-38083095)
chr5 (209-244)||(4561682-4561717)
chr5 (206-244)||(11721524-11721562)
chr5 (206-244)||(23159692-23159730)
chr5 (206-244)||(25919815-25919853)
chr5 (206-244)||(29691216-29691254)
chr5 (206-244)||(38874417-38874455)
chr5 (206-244)||(41123223-41123261)
chr5 (185-246)||(6527313-6527374)
chr5 (125-174)||(10819543-10819592)
chr5 (206-242)||(10819465-10819501)
chr5 (207-243)||(12147989-12148025)
chr5 (206-250)||(18232018-18232062)
chr5 (208-260)||(31567697-31567747)
[»] chr3 (30 HSPs)
chr3 (100-324)||(55257639-55257864)
chr3 (91-225)||(25124866-25125000)
chr3 (113-260)||(43426358-43426505)
chr3 (110-246)||(17582462-17582600)
chr3 (129-324)||(7308179-7308373)
chr3 (141-260)||(23070058-23070176)
chr3 (91-300)||(17030660-17030869)
chr3 (125-239)||(7013249-7013363)
chr3 (152-260)||(25159022-25159129)
chr3 (128-242)||(30226238-30226352)
chr3 (177-260)||(5303668-5303750)
chr3 (143-244)||(37050164-37050265)
chr3 (151-260)||(18359295-18359403)
chr3 (140-241)||(45008056-45008158)
chr3 (209-247)||(1347666-1347704)
chr3 (206-260)||(17030593-17030645)
chr3 (206-244)||(48689330-48689368)
chr3 (152-220)||(20275533-20275601)
chr3 (206-244)||(300425-300463)
chr3 (206-244)||(5572212-5572249)
chr3 (206-244)||(13041442-13041480)
chr3 (206-244)||(13049519-13049557)
chr3 (206-260)||(18359450-18359503)
chr3 (206-244)||(25387665-25387703)
chr3 (206-244)||(26770000-26770038)
chr3 (206-244)||(52839378-52839416)
chr3 (125-167)||(54571292-54571334)
chr3 (159-204)||(22438731-22438776)
chr3 (125-173)||(13439757-13439805)
chr3 (208-244)||(19111021-19111057)
[»] chr2 (34 HSPs)
chr2 (91-260)||(42223156-42223325)
chr2 (125-260)||(16590583-16590716)
chr2 (101-260)||(41906132-41906289)
chr2 (125-260)||(35791130-35791264)
chr2 (125-244)||(31989489-31989607)
chr2 (128-260)||(11478052-11478184)
chr2 (152-324)||(11915181-11915352)
chr2 (125-241)||(31397395-31397510)
chr2 (125-244)||(31377684-31377803)
chr2 (142-260)||(41567315-41567432)
chr2 (162-233)||(29878811-29878882)
chr2 (144-204)||(23381343-23381403)
chr2 (129-200)||(13315985-13316055)
chr2 (206-244)||(17188731-17188769)
chr2 (206-243)||(15580626-15580663)
chr2 (143-242)||(959662-959761)
chr2 (207-246)||(18155450-18155489)
chr2 (206-244)||(15543794-15543832)
chr2 (206-244)||(16139057-16139095)
chr2 (206-244)||(16204388-16204426)
chr2 (206-244)||(19272920-19272958)
chr2 (206-244)||(25293416-25293453)
chr2 (206-244)||(30497407-30497445)
chr2 (206-260)||(35791059-35791112)
chr2 (206-244)||(38128019-38128057)
chr2 (177-238)||(24486596-24486657)
chr2 (209-250)||(30602594-30602635)
chr2 (206-250)||(7007848-7007892)
chr2 (208-244)||(9419579-9419615)
chr2 (207-239)||(11915102-11915134)
chr2 (206-242)||(18756432-18756468)
chr2 (219-247)||(19612242-19612270)
chr2 (206-250)||(31989427-31989471)
chr2 (206-242)||(39373219-39373255)
[»] chr7 (36 HSPs)
chr7 (101-256)||(9689291-9689446)
chr7 (101-247)||(43393849-43393996)
chr7 (91-260)||(1853233-1853398)
chr7 (91-260)||(42957424-42957593)
chr7 (110-260)||(3092292-3092441)
chr7 (101-250)||(15635228-15635378)
chr7 (152-305)||(2936144-2936294)
chr7 (125-250)||(45687698-45687822)
chr7 (110-221)||(11625113-11625224)
chr7 (152-260)||(24812925-24813032)
chr7 (125-250)||(15011935-15012060)
chr7 (163-260)||(19377094-19377191)
chr7 (125-260)||(27082594-27082728)
chr7 (125-260)||(27195573-27195707)
chr7 (151-260)||(25601798-25601906)
chr7 (152-256)||(10394471-10394574)
chr7 (176-244)||(28696661-28696729)
chr7 (141-239)||(27484941-27485040)
chr7 (152-260)||(14675581-14675681)
chr7 (177-239)||(22859342-22859404)
chr7 (207-260)||(2936339-2936391)
chr7 (125-174)||(18268280-18268329)
chr7 (138-179)||(26876617-26876658)
chr7 (206-244)||(2300901-2300938)
chr7 (206-260)||(8391027-8391079)
chr7 (206-244)||(17051895-17051933)
chr7 (206-244)||(21022469-21022507)
chr7 (33-87)||(25583989-25584043)
chr7 (206-260)||(27484820-27484872)
chr7 (160-242)||(28543319-28543400)
chr7 (206-244)||(35158262-35158299)
chr7 (206-259)||(15011865-15011917)
chr7 (175-260)||(25898629-25898713)
chr7 (208-244)||(21521895-21521931)
chr7 (206-242)||(35158440-35158476)
chr7 (208-244)||(47370412-47370448)
[»] chr4 (32 HSPs)
chr4 (101-256)||(13555668-13555823)
chr4 (91-260)||(5283732-5283900)
chr4 (91-260)||(8810010-8810178)
chr4 (111-250)||(42161367-42161507)
chr4 (128-260)||(49277727-49277858)
chr4 (128-246)||(49533201-49533319)
chr4 (151-260)||(16875937-16876045)
chr4 (125-260)||(9780392-9780528)
chr4 (151-260)||(16734243-16734350)
chr4 (160-260)||(8678889-8678989)
chr4 (177-239)||(25786326-25786388)
chr4 (151-259)||(21744891-21744998)
chr4 (180-243)||(29172618-29172681)
chr4 (206-244)||(16589236-16589274)
chr4 (196-237)||(18509185-18509226)
chr4 (209-250)||(29172756-29172797)
chr4 (207-259)||(49277880-49277931)
chr4 (206-244)||(3652529-3652567)
chr4 (206-260)||(9780546-9780599)
chr4 (206-244)||(27626925-27626963)
chr4 (206-244)||(29104419-29104457)
chr4 (206-260)||(29700563-29700616)
chr4 (206-244)||(36395414-36395452)
chr4 (278-324)||(44005712-44005757)
chr4 (206-244)||(49166902-49166940)
chr4 (207-257)||(49533131-49533180)
chr4 (207-260)||(23091876-23091928)
chr4 (217-250)||(37589620-37589653)
chr4 (208-244)||(18510242-18510278)
chr4 (170-241)||(19376596-19376667)
chr4 (208-244)||(30919175-30919211)
chr4 (159-239)||(40920721-40920801)
[»] scaffold0004 (1 HSPs)
scaffold0004 (112-257)||(82300-82444)
[»] chr8 (31 HSPs)
chr8 (112-260)||(9235440-9235587)
chr8 (111-324)||(23288999-23289212)
chr8 (91-260)||(5600247-5600413)
chr8 (91-260)||(5640207-5640373)
chr8 (125-241)||(13373258-13373373)
chr8 (91-221)||(14698164-14698293)
chr8 (128-242)||(24375771-24375884)
chr8 (108-232)||(24528887-24529011)
chr8 (128-247)||(23245660-23245779)
chr8 (175-250)||(11908474-11908549)
chr8 (159-250)||(12719159-12719249)
chr8 (180-242)||(8980741-8980803)
chr8 (178-260)||(28786366-28786447)
chr8 (206-260)||(13980023-13980076)
chr8 (206-244)||(10761679-10761717)
chr8 (206-244)||(25653784-25653822)
chr8 (206-238)||(28786519-28786551)
chr8 (207-243)||(28999510-28999546)
chr8 (217-260)||(24754628-24754670)
chr8 (206-244)||(9662273-9662311)
chr8 (206-244)||(11830433-11830471)
chr8 (206-244)||(12478831-12478869)
chr8 (206-244)||(13558799-13558837)
chr8 (206-244)||(32684641-32684679)
chr8 (206-244)||(34845363-34845401)
chr8 (206-244)||(41509459-41509497)
chr8 (154-247)||(11311297-11311390)
chr8 (178-243)||(25057020-25057085)
chr8 (206-243)||(36637251-36637288)
chr8 (208-244)||(2873708-2873744)
chr8 (208-244)||(34227587-34227623)
[»] chr1 (33 HSPs)
chr1 (91-239)||(25059885-25060033)
chr1 (108-260)||(5469440-5469592)
chr1 (152-260)||(13437010-13437117)
chr1 (125-260)||(33864186-33864321)
chr1 (125-260)||(33916601-33916736)
chr1 (101-260)||(17890132-17890290)
chr1 (159-260)||(7261487-7261587)
chr1 (130-241)||(24023179-24023289)
chr1 (125-260)||(44078664-44078798)
chr1 (187-324)||(22315145-22315282)
chr1 (160-252)||(5882997-5883089)
chr1 (128-240)||(44228413-44228524)
chr1 (177-250)||(15654059-15654132)
chr1 (139-242)||(16639555-16639659)
chr1 (125-241)||(22151971-22152087)
chr1 (170-233)||(23621217-23621280)
chr1 (170-233)||(23737996-23738059)
chr1 (177-233)||(23652563-23652619)
chr1 (210-260)||(9240531-9240580)
chr1 (206-244)||(19967820-19967858)
chr1 (177-260)||(9240654-9240736)
chr1 (206-244)||(21770981-21771019)
chr1 (88-166)||(22315288-22315365)
chr1 (206-244)||(23161905-23161942)
chr1 (206-244)||(26190988-26191026)
chr1 (206-244)||(27666174-27666212)
chr1 (206-260)||(33864115-33864168)
chr1 (206-260)||(33916754-33916807)
chr1 (206-260)||(44228339-44228392)
chr1 (201-250)||(6667399-6667448)
chr1 (206-243)||(22387224-22387261)
chr1 (174-242)||(15657992-15658060)
chr1 (208-244)||(44961264-44961300)
[»] chr6 (21 HSPs)
chr6 (91-250)||(9044531-9044690)
chr6 (108-250)||(25167002-25167144)
chr6 (108-241)||(9662835-9662968)
chr6 (129-260)||(3816552-3816681)
chr6 (162-238)||(20757608-20757684)
chr6 (177-239)||(33198608-33198670)
chr6 (206-324)||(3816703-3816820)
chr6 (159-241)||(6759742-6759824)
chr6 (210-260)||(33200018-33200067)
chr6 (177-260)||(334912-334993)
chr6 (206-244)||(1227934-1227972)
chr6 (206-244)||(2270742-2270780)
chr6 (207-249)||(18274361-18274403)
chr6 (206-244)||(21544388-21544426)
chr6 (206-244)||(29942605-29942642)
chr6 (207-244)||(686551-686587)
chr6 (206-243)||(16119918-16119955)
chr6 (207-244)||(22495780-22495817)
chr6 (206-243)||(31174052-31174089)
chr6 (208-244)||(7321840-7321876)
chr6 (190-238)||(12655187-12655234)
[»] scaffold0067 (1 HSPs)
scaffold0067 (124-239)||(25844-25960)
[»] scaffold0188 (1 HSPs)
scaffold0188 (162-324)||(13286-13447)
[»] scaffold0003 (1 HSPs)
scaffold0003 (170-244)||(306688-306762)
[»] scaffold0110 (1 HSPs)
scaffold0110 (151-238)||(23194-23281)
[»] scaffold0142 (2 HSPs)
scaffold0142 (195-250)||(34509-34564)
scaffold0142 (91-199)||(34884-34993)
[»] scaffold1462 (1 HSPs)
scaffold1462 (206-244)||(337-375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (206-244)||(63111-63149)
[»] scaffold0010 (1 HSPs)
scaffold0010 (206-260)||(145149-145201)
[»] scaffold0002 (2 HSPs)
scaffold0002 (206-244)||(432475-432513)
scaffold0002 (208-244)||(332324-332360)
[»] scaffold0121 (1 HSPs)
scaffold0121 (208-244)||(12727-12763)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 37869370 - 37869922
Alignment:
Q  19 gaatggttgataatatattactcacttcatactctacagtgaatcgctcactttagaagagcctgatcctaaaaaatcaataatatgggagggggtaaac 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37869370 gaatggttgataatatattactcacttcatactctacggtgaatcgctcactttagaagagcctgatcctaaaaaatcaatgatatgggagggggtaaac 37869469  T
Q  119 tgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaa 218  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37869470 tgaaatatcgatgatatggcaggaggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaa 37869569  T
Q  219 aatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  37869570 aatcaaagaatcttcaaattacaaggttggaaatctaaacaattttttttacaggagataaaccgaaaatcgttaatattacaggagattaaacatatat 37869669  T
Q  319 taacccnnnnnnnatatcaagtccttttacatggtcctttnnnnnnnngtaattttatatta-ttttttctttggtgaaaactacctttaaacaaacttg 417  Q
    ||||||       |||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37869670 taaccctttttttatatcaagtccttttacatggtcctttaaaaaaaagtaattttatattatttttttctttggtgaaaactacctttaaacaaacttg 37869769  T
Q  418 ttacnnnnnnnnctctcgtaagtttaactcagttgatagagacaaagttcgaggttcagacctcgaccaccnnnnnnnntttgttactttttagttaaaa 517  Q
    ||||        |||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||         ||||||||||||||||||||    
T  37869770 ttac-tttttttctctcgtaagtttagctcagttgataaagacaaagttcgaggttcagatctcaaccaccaaaaaaaacttgttactttttagttaaaa 37869868  T
Q  518 atgaaatttgtgaagtttatgtgttaacgtaataaatttttattatattcttcg 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37869869 atgaaatttgtgaagtttatgtgttaacgtaataaatttttattatattgttcg 37869922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 21144181 - 21144023
Alignment:
Q  101 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 200  Q
    |||||| | |||||||||| |||||||||||||||  ||| |||||||   |||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  21144181 atatggcaaggggtaaactaaaatatcgatgatatgacagagggtaaaccaaaattctctcaaattacaaggggcaaaagtacatcaaattttgtaattt 21144082  T
Q  201 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  21144081 gatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaa 21144023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 20355146 - 20355314
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    |||||| || |||||| |||||||||||  ||||||||||||||| ||||||||||||  |||||||  |||||||| ||||||||| ||||||||||||    
T  20355146 aaaatcgatgatatggtagggggtaaaccaaaatatcgatgatattgcagggggtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaat 20355245  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||| |||||||||| ||| ||||| |||||||||| ||||||||||||||| | |||| |||||||||||    
T  20355246 tttttaatttgatgccatcaaggttcaaaatcaaaaaatcttcaaattacaggattgg-aatctaaacaa 20355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 13153726 - 13153599
Alignment:
Q  132 atatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatct 231  Q
    |||| ||||||||||||  ||||||||||||||||| ||||| | |||||||| ||||||||||| |||||||  ||||||||||||||| ||  |||||    
T  13153726 atatggcagggggtaaaccgaaattctctcaaattacaagggacgaaagtaccgtaaattttgtattttgatgctatgaaggtccaaaataaagaaatct 13153627  T
Q  232 tcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||||| |||||||||||    
T  13153626 tcaaattacaaggttgg-aatctaaacaa 13153599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 15399797 - 15399611
Alignment:
Q  140 gggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat--caaagaatcttcaaat 237  Q
    |||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||||   ||| |||||||||||    
T  15399797 gggggtaaatcgaaattatctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgttatgaaggtccaaaataaaaaaaaatcttcaaat 15399698  T
Q  238 tacaaggttggaaatctaaacaannnnnnnnaca-ggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 324  Q
    |||| ||||||  ||||||||||        ||| || | ||||||  |||||| ||||||||| ||||| |||||||||||||||||    
T  15399697 tacagggttgg-gatctaaacaaatttttttacatggaggtaaaccagaaatcgctaatattacaggagagtaaacatatattaaccc 15399611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 42778936 - 42779064
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||   ||||  ||||  ||||||||||||||||| ||||| | ||||||||||||||    
T  42778936 aaaatcaatgatatggcagggggtaacctgaaatatcgatgatatgataggga-taaaccgaaattctctcaaattacaaggg-cgaaagtaccttaaat 42779033  T
Q  191 tttgtaatttgatgacatgaaggtccaaaat 221  Q
    |||||||||||||| ||||||||||||||||    
T  42779034 tttgtaatttgatgtcatgaaggtccaaaat 42779064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 17668743 - 17668850
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    |||||||||||||||| | ||||| |||||||||||||||||  | ||||||  |||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  17668743 aaattctctcaaattacagggggcgaaagtaccttaaattttaaattttgatatcatgaaagtccaaaatcaaagaatctttaaattacaatgtt-gaaa 17668841  T
Q  252 tctaaacaa 260  Q
    ||| |||||    
T  17668842 tcttaacaa 17668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 20628105 - 20628040
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    |||||||| ||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||    
T  20628105 aaagtaccataaattttgtaatttgatgccaagaaggtccaaaaccaaagaattttcaaattacaa 20628040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 31567818 - 31567882
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 241  Q
    |||||||  ||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||    
T  31567818 aaagtactataaattttgtaatttgatatcatgaaggtccaaaaccaaaaaatcttcaaattaca 31567882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 38083002 - 38082947
Alignment:
Q  182 accttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 237  Q
    ||||||||||| |||||||||||  ||| |||| ||||||||||||||||||||||    
T  38083002 accttaaatttcgtaatttgatgctatgtaggttcaaaatcaaagaatcttcaaat 38082947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Complemental strand, 35687402 - 35687296
Alignment:
Q  143 ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaa-----aatcaaagaatcttcaaat 237  Q
    ||||||| ||||||  ||||||||   ||||||  ||||||  |||||||||||||||||||  ||||||||||||     ||||||| |||||||||||    
T  35687402 ggtaaatcgaaatttgctcaaatttacaggggcggaagtactataaattttgtaatttgatgctatgaaggtccaaaatgtaatcaaaaaatcttcaaat 35687303  T
Q  238 tacaagg 244  Q
    |||||||    
T  35687302 tacaagg 35687296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 38083061 - 38083095
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattac 240  Q
    |||||||||||||||||||||||||||||||||||    
T  38083061 catgaaggtccaaaatcaaagaatcttcaaattac 38083095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 4561717 - 4561682
Alignment:
Q  209 gaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4561717 gaaggtccaaaatcaaaaaatcttcaaattacaagg 4561682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 11721524 - 11721562
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  11721524 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 11721562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 23159692 - 23159730
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  23159692 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 23159730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 25919815 - 25919853
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  25919815 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 25919853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 29691216 - 29691254
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  29691216 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 29691254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 38874455 - 38874417
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  38874455 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 38874417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 41123261 - 41123223
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  41123261 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 41123223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 6527374 - 6527313
Alignment:
Q  185 ttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggtt 246  Q
    |||||||||||||||| ||| ||||||  ||||||| |||| ||||||||||| ||| ||||    
T  6527374 ttaaattttgtaattttatgtcatgaaaatccaaaaccaaataatcttcaaatcacagggtt 6527313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 10819592 - 10819543
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataagggg 174  Q
    ||||| ||||| ||||||||||||| |||||| |||||||||| ||||||    
T  10819592 atcgaagatatggcagggggtaaatcgaaattttctcaaattacaagggg 10819543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 10819501 - 10819465
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  10819501 catgaaggtctaaaatcaaaaaatcttcaaattacaa 10819465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 12148025 - 12147989
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    |||||||||||||| |||| |||||||||||||||||    
T  12148025 atgaaggtccaaaaccaaaaaatcttcaaattacaag 12147989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 18232018 - 18232062
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  18232018 catgaaggttcaaaaccaaagaatctttaaattacagggttggaa 18232062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 31567747 - 31567697
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||| |||| |||||||||||||||||| | |||||||||||||    
T  31567747 tgaaggtccaaaaccaaa-aatcttcaaattacaaggat-gaaatctaaacaa 31567697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 100 - 324
Target Start/End: Complemental strand, 55257864 - 55257639
Alignment:
Q  100 aatatgggagggggtaaactgaaatatcgatgatatagcagggg-gtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaat 198  Q
    ||||||| | |||||||||||||||||||||||||| ||||||| |||||  |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  55257864 aatatggcaaggggtaaactgaaatatcgatgatatggcaggggtgtaaactgaaattctatcaaattataaggggcgaaagtaccttaaattttgtaat 55257765  T
Q  199 ttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatatt 298  Q
    |||||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||||||        ||||||| ||||||| |||||| |||||||    
T  55257764 ttgatgccatgaaggtccaaaataaaaaaatcttcaaattatagggttgg-aatctaaacaattttttttacagggggtaaaccggaaatcgctaatatt 55257666  T
Q  299 ac-tggagattaaacatatattaaccc 324  Q
    ||  || |  |||||||||||||||||    
T  55257665 acagggggggtaaacatatattaaccc 55257639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 25125000 - 25124866
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    |||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||| ||||||| ||||||||||||||    
T  25125000 aaaatcgatgatatggaagggggtaaactgaaatatcgatgatatggcagggggtaaactgaaattctcccaaattacaaggggcgaaagtaccttaaat 25124901  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaa 225  Q
    ||| |||||||||| ||||||||||||||||||||    
T  25124900 tttataatttgatgccatgaaggtccaaaatcaaa 25124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 113 - 260
Target Start/End: Original strand, 43426358 - 43426505
Alignment:
Q  113 gtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 211  Q
    ||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||    
T  43426358 gtaaactgaaatatcgatgatatggcaggggggtaaaccgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgctatgaa 43426457  T
Q  212 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||| ||||||||| ||||||||||||||| |||| | |||||||||||    
T  43426458 ggtctaaaatcaaaaaatcttcaaattacagggttcg-aatctaaacaa 43426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 17582462 - 17582600
Alignment:
Q  110 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 209  Q
    ||||| ||||||||||||||| |||| ||||| ||||||  |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||  |||    
T  17582462 ggggttaactgaaatatcgattatatggcaggaggtaaaccgaaaatctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgctatg 17582561  T
Q  210 aaggtccaaaat--caaagaatcttcaaattacaaggtt 246  Q
    ||||||||||||   ||| ||||||||||||||||||||    
T  17582562 aaggtccaaaataaaaaaaaatcttcaaattacaaggtt 17582600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 129 - 324
Target Start/End: Original strand, 7308179 - 7308373
Alignment:
Q  129 atgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaa 228  Q
    ||||||| ||||||||||||  ||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||    
T  7308179 atgatatggcagggggtaaaccgaaattctctcaaattaca-ggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtcaaaaataaaaaaa 7308277  T
Q  229 tcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactg-gagattaaacatatattaaccc 324  Q
    ||||||||||| | |||||| ||||| |||||        ||||||| ||||||  |||||| ||||||||| | | | ||||||||||||||||||    
T  7308278 tcttcaaattatagggttgg-aatctgaacaattttttttacagggggtaaaccagaaatcgctaatattacagaggggttaaacatatattaaccc 7308373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 23070176 - 23070058
Alignment:
Q  141 ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattac 240  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| || |||||| |||||||||| |||||| |||||||    
T  23070176 ggggtaaatcgaaattctctcaaattagaaggggcgaaagtaccttaaattttataatttgatgtcacgaaggttcaaaatcaaaaaatctttaaattac 23070077  T
Q  241 aaggttggaaatctaaacaa 260  Q
     ||||| |||||||||||||    
T  23070076 taggtt-gaaatctaaacaa 23070058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 91 - 300
Target Start/End: Original strand, 17030660 - 17030869
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    ||||||||| |||||  ||| ||||| |||||||||||||||||| ||||| ||||||   |||||||||||| ||| | ||||  ||||||||||||||    
T  17030660 aaaatcaatgatatgtcaggtggtaacctgaaatatcgatgatatggcaggaggtaaaccaaaattctctcaatttaca-ggggtgaaagtaccttaaat 17030758  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacagggg-ataaaccgaaaat 288  Q
    |||||||||||||| ||||||||||||||||| ||| |||||| |||||| | |||| |||||| ||||||        ||||||| |||||||| ||||    
T  17030759 tttgtaatttgatgccatgaaggtccaaaatcaaaaaaatctttaaattagagggtt-gaaatcaaaacaaagttttttacaggggaataaaccggaaat 17030857  T
Q  289 cgttaatattac 300  Q
    || |||||||||    
T  17030858 cgctaatattac 17030869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 7013363 - 7013249
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    |||||||| || |||||||||||||  |||||||||||||||| | ||||| |||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  7013363 atcgatgacatggcagggggtaaatctaaattctctcaaattacatggggcgaaagtatcttaaattttgtaatttgataccatgaaagtccaaaatcaa 7013264  T
Q  225 agaatcttcaaatta 239  Q
    | |||||||||||||    
T  7013263 ataatcttcaaatta 7013249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 25159022 - 25159129
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    |||||||||||||||| | | ||| ||| |||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| | ||    
T  25159022 aaattctctcaaattacaggaggcgaaaataccttaaattttgtaatttgatgccatgaacgtccaaaatcaaaaaatattcaaattacaaggttag-aa 25159120  T
Q  252 tctaaacaa 260  Q
    |||||||||    
T  25159121 tctaaacaa 25159129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 30226238 - 30226352
Alignment:
Q  128 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 227  Q
    ||||||||  |||||||||||   |||||  |||||| || ||||||  |||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  30226238 gatgatatgacagggggtaaactaaaatttgctcaaactacaaggggtgaaagtaccataaattttgtaatttgttgtcatgaaggtccaaaatcaaaga 30226337  T
Q  228 atcttcaaattacaa 242  Q
    |||||||||||||||    
T  30226338 atcttcaaattacaa 30226352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 5303668 - 5303750
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||| || |||||||||||| |||||||||| |||| |||||||||||||||||||| |||||| |||||||||||    
T  5303668 aaagtaccttaagttctgtaatttgatgtcatgaaggtctaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 5303750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 37050164 - 37050265
Alignment:
Q  143 ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgac-atgaaggtccaaaatcaaagaatcttcaaattaca 241  Q
    ||||||| ||||||  ||||||||| ||||||| ||||||||||||||||||||| |||||| | | ||| ||||||||||||||||||||||||||| |    
T  37050164 ggtaaatcgaaatttgctcaaattacaaggggcgaaagtaccttaaattttgtaa-ttgatgtcaaagaatgtccaaaatcaaagaatcttcaaattata 37050262  T
Q  242 agg 244  Q
    |||    
T  37050263 agg 37050265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 18359403 - 18359295
Alignment:
Q  151 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||||||||||||| |  || | |||||||||||||||||||||||||||| |||| |  || ||||  ||||||||||||||||||| |||||| |    
T  18359403 gaaattctctcaaattacagcggactaaagtaccttaaattttgtaatttgatgccatgtatatctaaaactaaagaatcttcaaattacagggttgg-a 18359305  T
Q  251 atctaaacaa 260  Q
    ||||||||||    
T  18359304 atctaaacaa 18359295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 45008056 - 45008158
Alignment:
Q  140 gggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaatt 238  Q
    |||||||||  |||||| | |||||||| ||||||| ||||| |||||||||||||||||||||| || ||| |||||||||  ||| ||||||||||||    
T  45008056 gggggtaaaccgaaattttatcaaattacaaggggcgaaagttccttaaattttgtaatttgatgccaagaatgtccaaaataaaaaaaatcttcaaatt 45008155  T
Q  239 aca 241  Q
    |||    
T  45008156 aca 45008158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 1347704 - 1347666
Alignment:
Q  209 gaaggtccaaaatcaaagaatcttcaaattacaaggttg 247  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  1347704 gaaggtccaaaatcaaagaatattcaaattacaaggttg 1347666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 17030645 - 17030593
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||    
T  17030645 catgaaggtccaaaaccaaa-aatcttcaaattacaaggttgg-aatctaaacaa 17030593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 48689330 - 48689368
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  48689330 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 48689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 20275533 - 20275601
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaa 220  Q
    ||||||||| |||||| |   ||||||| |||||||||||||| ||||||||| ||| |||||||||||    
T  20275533 aaattctcttaaattacagttggcaaaaataccttaaattttgaaatttgatgtcataaaggtccaaaa 20275601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 300425 - 300463
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  300425 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 300463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 5572212 - 5572249
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  5572212 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 5572249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 13041480 - 13041442
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13041480 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13041442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 13049557 - 13049519
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13049557 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13049519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 18359450 - 18359503
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||| |||  ||||||||||| ||||||||||||| |||||||||||||    
T  18359450 catgaaggtctaaatccaaagaatctttaaattacaaggtt-gaaatctaaacaa 18359503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 25387703 - 25387665
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  25387703 catgaaggtctaaaatcaaagaatcttgaaattacaagg 25387665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 26770038 - 26770000
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  26770038 catgaaggtccaaaagcaaaaaatcttcaaattacaagg 26770000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 52839416 - 52839378
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  52839416 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 52839378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 54571334 - 54571292
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaatta 167  Q
    ||||||||||||||||||||||||  |||||| ||||||||||    
T  54571334 atcgatgatatagcagggggtaaacggaaattttctcaaatta 54571292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 22438776 - 22438731
Alignment:
Q  159 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatg 204  Q
    ||||||||||| ||||| |||||||  |||||||||||||||||||    
T  22438776 ctcaaattatagggggcgaaagtacaataaattttgtaatttgatg 22438731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 13439805 - 13439757
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggg 173  Q
    ||||| ||||||||||||||||||| ||||||  ||||||||| |||||    
T  13439805 atcgaagatatagcagggggtaaattgaaatttgctcaaattacaaggg 13439757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 19111057 - 19111021
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  19111057 tgaaggtccaaaataaaaaaatcttcaaattacaagg 19111021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 42223156 - 42223325
Alignment:
Q  91 aaaatcaataatatgggaggg-ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaa 189  Q
    |||||| || |||||| |||| ||||||| ||||||| ||||||||  |||||||||||  |||||||| |||||||| ||||||| |||||||||||||    
T  42223156 aaaatcgatgatatggtagggtggtaaaccgaaatattgatgatatgtcagggggtaaaccgaaattctttcaaattacaaggggcgaaagtaccttaaa 42223255  T
Q  190 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||| |||||||||||    
T  42223256 ttttgtaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaa 42223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 16590583 - 16590716
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    ||||||||||||| ||||||||||| ||||||||||||||| ||| | ||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  16590583 atcgatgatatagtagggggtaaatcgaaattctctcaaat-ataggaggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaaccaa 16590681  T
Q  225 agaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    | |||||||||||||| ||||| ||||| |||||||    
T  16590682 ataatcttcaaattac-aggtttgaaatataaacaa 16590716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 41906132 - 41906289
Alignment:
Q  101 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 200  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||  ||| ||||  | ||||||||| ||||||||||||||    
T  41906132 atatggaagggggtaaactgaaatatcaatgatatggcagggggtaaactgaaattctctcatgttacaaggt-cgaaagtacctaaaattttgtaattt 41906230  T
Q  201 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||| ||| |||||||||||| ||| |||||||||||||||||||| ||||| |||||||    
T  41906231 gatgccataaaggtccaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 41906289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 35791130 - 35791264
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    ||||||||||| ||||||||||||  ||||| ||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||  ||||||||    
T  35791130 atcgatgatatggcagggggtaaaccgaaatactctcaaattacaaagggcgaaagtaccttaaattttgtaatttgatggcatgaaggtttaaaatcaa 35791229  T
Q  225 agaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||| ||||||||  ||| |||||||||||||    
T  35791230 agaatctttaaattacagagtt-gaaatctaaacaa 35791264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 31989489 - 31989607
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    ||||||||||| ||||||| ||||  ||||||  |||| |||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||    
T  31989489 atcgatgatatggcagggg-taaactgaaatttgctcatattatagggggcgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaa 31989587  T
Q  225 agaatcttcaaattacaagg 244  Q
    ||||||||||||||||||||    
T  31989588 agaatcttcaaattacaagg 31989607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 11478184 - 11478052
Alignment:
Q  128 gatgatatagcagg-gggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaag 226  Q
    |||||||| ||||| |||||||  |||||| || ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  11478184 gatgatatggcaggagggtaaaccgaaattatcccaaattacaagaggcgaaagtaccttaaattttgtaatttgatgctatgaaggtccaaaaccaaag 11478085  T
Q  227 aatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||| ||||||||||| |||| |||||||||||||    
T  11478084 aattttcaaattacagggtt-gaaatctaaacaa 11478052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 152 - 324
Target Start/End: Original strand, 11915181 - 11915352
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |  ||| ||||    
T  11915181 aaattctctcaaattacacggggcgaaagtgccttaaattttgtaatttgatgtcatgaaggtccaaaaccaaaaaatcttcaaattatagagtt-gaaa 11915279  T
Q  252 tctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 324  Q
    | |||||||        |||||   |||||||||||| | ||||||||| || |  |||||||||||||||||    
T  11915280 tttaaacaatattttttacaggaagtaaaccgaaaattgctaatattacaggggggtaaacatatattaaccc 11915352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 31397395 - 31397510
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    |||||| |||| ||||||||||||| ||||| | ||||||||| ||||||| |||||| | ||||||||| ||||||| | ||||||||||||||| |||    
T  31397395 atcgataatatggcagggggtaaattgaaat-cgctcaaattacaaggggcgaaagtatcataaattttgaaatttgacgtcatgaaggtccaaaaccaa 31397493  T
Q  225 agaatcttcaaattaca 241  Q
    | |||||||||||||||    
T  31397494 ataatcttcaaattaca 31397510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 31377684 - 31377803
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    ||||||||||| ||||||| ||||   |||||  ||||||||| | | ||| |||||||  ||||||||||||| ||||| ||||||||||||||| |||    
T  31377684 atcgatgatatggcaggggttaaaccaaaatttgctcaaattacaggaggcgaaagtactataaattttgtaatatgatgccatgaaggtccaaaaccaa 31377783  T
Q  225 agaatcttcaaattacaagg 244  Q
    | ||||||||||||||||||    
T  31377784 ataatcttcaaattacaagg 31377803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 41567432 - 41567315
Alignment:
Q  142 gggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 241  Q
    ||||||| | ||| || ||||||||| | | ||| |||||||||||||||||| ||||||||  ||| ||| ||||||||| || ||| |||||||||||    
T  41567432 gggtaaacaaaaaatcgctcaaattacatgaggcgaaagtaccttaaattttgaaatttgataccataaagatccaaaatcgaataattttcaaattaca 41567333  T
Q  242 aggttggaaatctaaacaa 260  Q
    ||||| |||||||||||||    
T  41567332 aggtt-gaaatctaaacaa 41567315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 29878882 - 29878811
Alignment:
Q  162 aaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 233  Q
    |||||| ||||| | ||| |||| ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  29878882 aaattacaagggacgaaaataccataaattttgtaatttgatgccatgaatgtccaaaatcaaagaatcttc 29878811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 23381343 - 23381403
Alignment:
Q  144 gtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatg 204  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  23381343 gtaaatcgaaatttactcaaattacaaggggcgaaagtaccataaattttgtaatttgatg 23381403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 13315985 - 13316055
Alignment:
Q  129 atgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 200  Q
    ||||||| ||||||||||||| |||||||| ||||||||  | |||| ||||||||| ||||||||||||||    
T  13315985 atgatatggcagggggtaaatcgaaattctttcaaatta-catgggcgaaagtacctgaaattttgtaattt 13316055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 17188769 - 17188731
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  17188769 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 17188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 15580626 - 15580663
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    |||||||||||||||||||| |||||||||||||||||    
T  15580626 catgaaggtccaaaatcaaaaaatcttcaaattacaag 15580663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 959662 - 959761
Alignment:
Q  143 ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    ||||||| ||||||  ||||||||  |||| || |||||||||||||||||  ||||| ||| ||| ||||| |||||| ||| |||||| | |||||||    
T  959662 ggtaaattgaaatttgctcaaatttcaaggagcgaaagtaccttaaattttaaaatttaatgtcataaaggttcaaaattaaataatctttacattacaa 959761  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 18155450 - 18155489
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaaggtt 246  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  18155450 atgaaggtccaaaaccaaagaatcttcgaattacaaggtt 18155489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 15543832 - 15543794
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  15543832 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 15543794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 16139057 - 16139095
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  16139057 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 16139095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 16204426 - 16204388
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  16204426 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 16204388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 19272920 - 19272958
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  19272920 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 19272958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 25293453 - 25293416
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25293453 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 25293416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 30497407 - 30497445
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  30497407 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 30497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 35791112 - 35791059
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||| || ||||| ||||||||||| |||||| |||||||||||    
T  35791112 catgaaggtccaaaaacagagaatattcaaattacagggttgg-aatctaaacaa 35791059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 38128019 - 38128057
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  38128019 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 38128057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 24486657 - 24486596
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 238  Q
    |||||| ||||||||||| ||||||||| |||||| ||||||||  ||| ||| ||||||||    
T  24486657 aaagtatcttaaattttgaaatttgatgtcatgaaagtccaaaactaaacaattttcaaatt 24486596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 30602594 - 30602635
Alignment:
Q  209 gaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  30602594 gaaggtctaaaagcaaagaatctttaaattacaaggttggaa 30602635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 7007892 - 7007848
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||||| |||| |||| |||||||||||||||||| |||||    
T  7007892 catgaaggtctaaaagcaaaaaatcttcaaattacaaggatggaa 7007848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 9419615 - 9419579
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  9419615 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 9419579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 11915134 - 11915102
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaatta 239  Q
    |||||||||||||| ||||||||||||||||||    
T  11915134 atgaaggtccaaaaccaaagaatcttcaaatta 11915102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 18756468 - 18756432
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  18756468 catgaaggtccaaaaccaaaaaatcttcaaattacaa 18756432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 19612242 - 19612270
Alignment:
Q  219 aatcaaagaatcttcaaattacaaggttg 247  Q
    |||||||||||||||||||||||||||||    
T  19612242 aatcaaagaatcttcaaattacaaggttg 19612270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 31989471 - 31989427
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||||| |||| |||||| |||||||||||||||| |||||    
T  31989471 catgaaggtcgaaaaccaaagattcttcaaattacaaggatggaa 31989427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 39373219 - 39373255
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  39373219 catgaaggttcaaaatcaaaaaatcttcaaattacaa 39373255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 9689446 - 9689291
Alignment:
Q  101 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 200  Q
    |||||| ||||||||||| ||||||| |||||||| | ||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  9689446 atatggtagggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataattt 9689347  T
Q  201 gatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaa 256  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  9689346 gatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacagggtt-gaaatctaa 9689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 43393849 - 43393996
Alignment:
Q  101 atatgggaggggg-taaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatt 199  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||  ||| ||||| | |||||||||||||||||||||||    
T  43393849 atatggaagggggataaactgaaatatcgatggtatagcagggggtaaactgaaattctctcacgttacaagggtcgaaagtaccttaaattttgtaatt 43393948  T
Q  200 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttg 247  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| |||||    
T  43393949 tgatgccatgaaggtccaaaataaaaaaatcttcaaattacagggttg 43393996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 1853233 - 1853398
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    |||||| || |||||  ||||||||||| |||||||||||||||  |||||||||||   ||||||||||||||||  | ||| | ||||||||||||||    
T  1853233 aaaatcgatgatatgacagggggtaaac-gaaatatcgatgataaggcagggggtaac--gaaattctctcaaatttcaggggacgaaagtaccttaaat 1853329  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  1853330 tttgaaatttgatgccatgaaggtccaaaatcaaaaaatcttcaaattacaaggttgg-aatctaaacaa 1853398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 42957593 - 42957424
Alignment:
Q  91 aaaatcaataatatgggagggg-gtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaa 189  Q
    ||||||||| |||| | ||||| ||||  ||||||||||| |||||  ||| |||||||| ||||||||||||||||| ||||| | |||||||||||||    
T  42957593 aaaatcaatgatatagcaggggagtaacatgaaatatcgaggatatgacagagggtaaatcgaaattctctcaaattacaagggacgaaagtaccttaaa 42957494  T
Q  190 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||| |||||||||||||||||||| ||  ||||||||||| |||| | |||||||||||    
T  42957493 ttttgtaatttgatgtcatgaaggtccaaaatcaaaaaaaattcaaattacagggttag-aatctaaacaa 42957424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 110 - 260
Target Start/End: Complemental strand, 3092441 - 3092292
Alignment:
Q  110 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 209  Q
    ||||||||  |||||||| ||||||| | ||||||||||  | ||||||||||||||||| ||||  ||||||||||||||||| ||||||||||  |||    
T  3092441 ggggtaaatcgaaatatcaatgatatggaagggggtaaaccgtaattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgtaatg 3092342  T
Q  210 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||  ||||||||| |||||| ||||||||||||| |||||||||||||    
T  3092341 aaggtttaaaatcaaaaaatctttaaattacaaggtt-gaaatctaaacaa 3092292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 15635228 - 15635378
Alignment:
Q  101 atatgggagggggtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatt 199  Q
    |||||| | ||||||||| |||||||||||||||| | |||||| ||||  ||||||||||||| ||||| ||||| |||||||| ||||||||| ||||    
T  15635228 atatggcatggggtaaaccgaaatatcgatgatatggtaggggggtaaaacgaaattctctcaagttatagggggcgaaagtaccataaattttgaaatt 15635327  T
Q  200 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||| ||| ||||| ||||||||||  ||||||||||||||  |||||||    
T  15635328 tgatggcataaaggttcaaaatcaaaatatcttcaaattacagagttggaa 15635378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 2936294 - 2936144
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||| ||||||||||| |||||| ||    
T  2936294 aaattctctcaaattacagggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtctaaaaccaaataattttcaaattacatggttgg-aa 2936196  T
Q  252 tctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggag 305  Q
    ||||||||         |||||| ||||||||||||||| ||||||||| ||||    
T  2936195 tctaaaca--tttttttacagggcataaaccgaaaatcgctaatattacaggag 2936144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 45687822 - 45687698
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    |||||||||||  |||||| ||||   |||||||||||||||||| ||||  ||||||||||||||||| |||||||||| ||||||||| | |||||||    
T  45687822 atcgatgatatgacaggggataaaccaaaattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgccatgaaggt-ctaaatcaa 45687724  T
Q  225 agaatcttcaaattacaaggttggaa 250  Q
    ||||||||||||||||| ||||||||    
T  45687723 agaatcttcaaattacagggttggaa 45687698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 11625113 - 11625224
Alignment:
Q  110 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 209  Q
    ||||||||| |||||||| ||||||| | ||||||||||  ||||||||| |||| || ||||||| ||||||||||||||| |||||||||||| ||||    
T  11625113 ggggtaaaccgaaatatcaatgatatggtagggggtaaaccgaaattctcacaaactacaaggggcgaaagtaccttaaattatgtaatttgatgtcatg 11625212  T
Q  210 aaggtccaaaat 221  Q
    ||||||||||||    
T  11625213 aaggtccaaaat 11625224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 24812925 - 24813032
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    ||||||| |||||||| |||||   |||||||||||||||||||||||||||| | | |||||| |||| |||||||||||||||||||| |||| ||||    
T  24812925 aaattctttcaaattacaagggatgaaagtaccttaaattttgtaatttgatgccttaaaggtctaaaaccaaagaatcttcaaattacagggtt-gaaa 24813023  T
Q  252 tctaaacaa 260  Q
    |||||||||    
T  24813024 tctaaacaa 24813032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 15011935 - 15012060
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    ||||||||||| |||| |||||||  |||||||||||||||||    ||  |||| |||||| ||||||||||||||||| | |||| || |||||||||    
T  15011935 atcgatgatatggcagagggtaaaccgaaattctctcaaattaccgaggataaaaataccttgaattttgtaatttgatgccgtgaatgttcaaaatcaa 15012034  T
Q  225 agaatcttcaaattacaaggttggaa 250  Q
    ||||||||||||||||| | ||||||    
T  15012035 agaatcttcaaattacaggattggaa 15012060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 19377094 - 19377191
Alignment:
Q  163 aattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||  |||||||||||||| || | | |||||||||||    
T  19377094 aattacaaggggcgaaagtaccttaaattttgtaatttgacgccatgaaggtccaaaataaaaatatcttcaaattacaggggttggaatctaaacaa 19377191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 27082728 - 27082594
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    |||||| |||| ||||||||||||   ||||| |||||||||| | ||||| ||||||||||||| |||||||||||||  ||| || ||| |||| |||    
T  27082728 atcgataatatggcagggggtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaa 27082629  T
Q  225 agaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||| |||||  ||||| |||||||||||    
T  27082628 agaatcttcaagttacagtgttgg-aatctaaacaa 27082594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 27195573 - 27195707
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    |||||| |||| ||||||||||||   ||||| |||||||||| | ||||| ||||||||||||| |||||||||||||  ||| || ||| |||| |||    
T  27195573 atcgataatatggcagggggtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaa 27195672  T
Q  225 agaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||| |||||  ||||| |||||||||||    
T  27195673 agaatcttcaagttacagtgttgg-aatctaaacaa 27195707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 25601906 - 25601798
Alignment:
Q  151 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||||| |||||| | ||||| ||||||| |||||||||||||||||||  |||||||||   ||  |||| |||||||||||||||||||||| |    
T  25601906 gaaattctctaaaattacagggggcgaaagtacattaaattttgtaatttgatatcatgaaggttttaagccaaaaaatcttcaaattacaaggttgg-a 25601808  T
Q  251 atctaaacaa 260  Q
    ||||||||||    
T  25601807 atctaaacaa 25601798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 10394574 - 10394471
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    ||||||||||||||||||| |||   |||| ||||||||||| ||||||||||  |||||| | ||||| ||||||||||||||||||||| ||| ||||    
T  10394574 aaattctctcaaattataaagggtggaagtgccttaaattttataatttgatgctatgaagatacaaaaccaaagaatcttcaaattacaaagtt-gaaa 10394476  T
Q  252 tctaa 256  Q
    |||||    
T  10394475 tctaa 10394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 28696661 - 28696729
Alignment:
Q  176 aaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||| ||| ||||||||||||||| | |||||||||||||||||||||| || |||||||||||    
T  28696661 aaaagtaccataagttttgtaatttgatgtcttgaaggtccaaaatcaaagaatattaaaattacaagg 28696729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 27484941 - 27485040
Alignment:
Q  141 ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaatta 239  Q
    ||||||||  |||||||||||||||||||  ||| ||||||| |||||||||| |||||| ||| ||||||| ||||||||  ||| |||||||||||||    
T  27484941 ggggtaaactgaaattctctcaaattatagagggtaaaagtatcttaaattttttaatttaatgccatgaagatccaaaataaaaaaaatcttcaaatta 27485040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 14675681 - 14675581
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    |||||||||||||||| | ||||||||||||| ||||||||||  ||       |||||| |||||||||||||||||||||||||||||| ||| ||||    
T  14675681 aaattctctcaaattacagggggcaaaagtactttaaattttgatat-------catgaaagtccaaaatcaaagaatcttcaaattacaatgtt-gaaa 14675590  T
Q  252 tctaaacaa 260  Q
    ||| |||||    
T  14675589 tcttaacaa 14675581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 22859404 - 22859342
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 239  Q
    |||||||| |||||||||||| |||| | ||||||| ||||||| |||| |||||||||||||    
T  22859404 aaagtaccataaattttgtaacttgaagccatgaagatccaaaaccaaaaaatcttcaaatta 22859342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 2936339 - 2936391
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||| |||| |||||||||||||||||||| |||| |||||||||||||    
T  2936339 atgaaggtcgaaaaccaaagaatcttcaaattacatggtt-gaaatctaaacaa 2936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 18268280 - 18268329
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataagggg 174  Q
    ||||||||||||||||||||||||  ||||||| |||||||||| |||||    
T  18268280 atcgatgatatagcagggggtaaaccgaaattcgctcaaattatcagggg 18268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 26876658 - 26876617
Alignment:
Q  138 cagggggtaaatagaaattctctcaaattataaggggcaaaa 179  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  26876658 cagggggtaaattgaaattttctcaaattataaggggcaaaa 26876617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 2300938 - 2300901
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2300938 catgaaggtccaaaatcaa-gaatcttcaaattacaagg 2300901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 8391079 - 8391027
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||    
T  8391079 catgaaggtccaaaatcaaa-aatctacaaattacaaggatggaaa-ctaaacaa 8391027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 17051933 - 17051895
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  17051933 catgaaggtccaaaatcaaaaaatattcaaattacaagg 17051895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 21022507 - 21022469
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21022507 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21022469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 25584043 - 25583989
Alignment:
Q  33 atattactcacttcatactctacagtgaatcgctcactttagaagagcctgatcc 87  Q
    ||||||||||||| | |||||| ||||| | |||||||||||||||||| |||||    
T  25584043 atattactcactttacactctaaagtgagttgctcactttagaagagccggatcc 25583989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 27484872 - 27484820
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||    
T  27484872 catgaagatccaaaatcaaa-aatcttcaaattacatggtt-gaaatctaaacaa 27484820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 28543319 - 28543400
Alignment:
Q  160 tcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    ||||||||||| || |||||||||  ||||||||||||||||||| | |  |||||||||| ||||| |  ||||||||||||    
T  28543319 tcaaattataaaggacaaaagtactataaattttgtaatttgatgtc-ttcaggtccaaaaccaaaggactttcaaattacaa 28543400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 35158299 - 35158262
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35158299 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 35158262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 15011917 - 15011865
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaaca 259  Q
    |||| |||| ||||| |||||||||||||||||||| |||| ||||||||||||    
T  15011917 catgcaggttcaaaaccaaagaatcttcaaattacagggtt-gaaatctaaaca 15011865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 25898629 - 25898713
Alignment:
Q  175 caaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||| |||||| |||| ||||||||  |||   |||  |||||| |||||||||||||||||||||||  ||||||||||||    
T  25898629 caaaagtatcttaaagtttgaaatttgatatcatatgggtttaaaatcgaagaatcttcaaattacaaggtt-aaaatctaaacaa 25898713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 21521931 - 21521895
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  21521931 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 21521895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 35158440 - 35158476
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  35158440 catgaaggtccaaaaccaaaaaatcttcaaattacaa 35158476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 47370412 - 47370448
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||| |||||| |||||||||||    
T  47370412 tgaaggtccaaaatcaaaaaatctttaaattacaagg 47370448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 101 - 256
Target Start/End: Complemental strand, 13555823 - 13555668
Alignment:
Q  101 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 200  Q
    |||||| ||||||||||| ||||||| |||||||| | ||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  13555823 atatggtagggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataattt 13555724  T
Q  201 gatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaa 256  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  13555723 gatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacagggtt-gaaatctaa 13555668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 5283732 - 5283900
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    |||||| || |||||| || |||||||  |||||||||||||||| ||||||||||||  |||||||  |||||||| ||||||||| ||||||||||||    
T  5283732 aaaatcgatgatatggtagagggtaaatcgaaatatcgatgatattgcagggggtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaat 5283831  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||| |||||||||| ||||||||| |||||||||| ||||||||||||||| | |||| |||||||||||    
T  5283832 tttttaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacaggattgg-aatctaaacaa 5283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 8810010 - 8810178
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    ||||||||| |||||  ||||||||| ||||||||||||||| ||   ||||||||||  |||||| |||||||||| | ||| | ||||||||||||||    
T  8810010 aaaatcaatgatatgacagggggtaacctgaaatatcgatgacatgatagggggtaaaccgaaattttctcaaattacacgggacgaaagtaccttaaat 8810109  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||| |||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  8810110 tttataatttgatgtcatgaaggtccaaaataaaaaaatcttcaaattacaaggtt-gaaatcttaacaa 8810178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 111 - 250
Target Start/End: Original strand, 42161367 - 42161507
Alignment:
Q  111 gggtaaactgaaatatcgatgatatagcagg-gggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 209  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||| | |     
T  42161367 gggtaaactgaaatatcgatgatatggcaggagggtaaatcgaaattctctcaaattacaaggagcgaaagtaccttaaattttgtaatttgatgccttc 42161466  T
Q  210 aaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||||||| |||  |||||||||||||| | ||||||    
T  42161467 aaggtccaaaattaaaagatcttcaaattacaggattggaa 42161507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 49277858 - 49277727
Alignment:
Q  128 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 227  Q
    |||||||| ||||||||||||| ||||||||| ||||||| |  ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |    
T  49277858 gatgatatcgcagggggtaaattgaaattctcgcaaattacagagggcaaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaaccaaata 49277759  T
Q  228 atcttcaaattacaaggttggaaatctaaacaa 260  Q
    || ||||||||||| |||||| |||||||||||    
T  49277758 attttcaaattacacggttgg-aatctaaacaa 49277727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 49533201 - 49533319
Alignment:
Q  128 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 227  Q
    |||||||||| || || ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |||| |    
T  49533201 gatgatataggagaggataaatcgaaattctctcaaattataaggggcaaaaatacgttaaattttgtaatttgatgtcatgaaggtccaaaaccaaata 49533300  T
Q  228 atcttcaaattacaaggtt 246  Q
    |||||||||||| ||||||    
T  49533301 atcttcaaattataaggtt 49533319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 16876045 - 16875937
Alignment:
Q  151 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||| | |    
T  16876045 gaaattctctcaaattacaggggacaaaaataccttaaattttgtaatttgatgccataaaggtcgaaaatcaaagaatcttcaaactacaaggtt-gta 16875947  T
Q  251 atctaaacaa 260  Q
    ||||||||||    
T  16875946 atctaaacaa 16875937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 9780528 - 9780392
Alignment:
Q  125 atcgatgatatagcag--ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc 222  Q
    ||||||||||| ||||  ||||||||  |||||| |||||||||| | |||   ||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  9780528 atcgatgatatggcagaaggggtaaaccgaaattatctcaaattacaggggatgaaagtaccttaaattttttaatttgatgccatgtaggtcgaaaatc 9780429  T
Q  223 aaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  9780428 aaagaatcttcaaattacagggttgg-aatctaaacaa 9780392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 16734243 - 16734350
Alignment:
Q  151 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||||||||||||| | || || ||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||| |||    
T  16734243 gaaattctctcaaattacagggtgcgaaaataccttaaattttgtaattttatgccatgaaggtctaaaatcaaagaatcttcaaattac-aggtt-gaa 16734340  T
Q  251 atctaaacaa 260  Q
    ||||||||||    
T  16734341 atctaaacaa 16734350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 8678989 - 8678889
Alignment:
Q  160 tcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaattacaaggttggaaatctaaac 258  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||| | |||||||||    
T  8678989 tcaaattacaagaggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaataaaaaaaatcttcaaattacaaggtttg-aatctaaac 8678891  T
Q  259 aa 260  Q
    ||    
T  8678890 aa 8678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 25786326 - 25786388
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 239  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25786326 aaagtaccttaaaatttgtaatttgatgccatgaaggttcaaaatcaaagaatcttcaaatta 25786388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 21744891 - 21744998
Alignment:
Q  151 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||||||||||||| |||  || |||| |||| |||||||||||||| | | ||||||  ||||||| |||||||| ||||||||||| |||||| |    
T  21744891 gaaattctctcaaattacaagaagcgaaagcacctaaaattttgtaatttcacgtcatgaaaatccaaaaccaaagaatattcaaattacatggttgg-a 21744989  T
Q  251 atctaaaca 259  Q
    |||||||||    
T  21744990 atctaaaca 21744998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 29172681 - 29172618
Alignment:
Q  180 gtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    ||||||||||||||| || |||||| ||| |||||||||||| ||| ||||| |||||||||||    
T  29172681 gtaccttaaattttgaaacttgatgccattaaggtccaaaataaaaaaatctccaaattacaag 29172618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 16589236 - 16589274
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  16589236 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 16589274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 18509185 - 18509226
Alignment:
Q  196 aatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 237  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  18509185 aatttgatgtcatgaagatccaaaatcaaagaatcttcaaat 18509226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 29172756 - 29172797
Alignment:
Q  209 gaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  29172756 gaaggttcaaaaccaaagaatcttcaaattacaaggttggaa 29172797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 49277880 - 49277931
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaaca 259  Q
    |||||||| ||||| |||| |||||||||||||||||||||| ||||||||||    
T  49277880 atgaaggttcaaaaccaaataatcttcaaattacaaggttgg-aatctaaaca 49277931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 3652529 - 3652567
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  3652529 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 3652567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 9780546 - 9780599
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||| |||| ||||||||||||||| |||| | |||||||||||    
T  9780546 catgaaggtccaaaaccaaataatcttcaaattacatggtt-gtaatctaaacaa 9780599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 27626925 - 27626963
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27626925 catgaaggtccaaaagcaaaaaatcttcaaattacaagg 27626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 29104419 - 29104457
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  29104419 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 29104457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 29700616 - 29700563
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||| ||||| ||||||||||||||| ||| |||||| |||||||||||    
T  29700616 catgaaggtcaaaaattaaagaatcttcaaataacagggttgg-aatctaaacaa 29700563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 36395452 - 36395414
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  36395452 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 36395414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 44005757 - 44005712
Alignment:
Q  278 aaaccgaaaatcgttaatattactggagattaaacatatattaaccc 324  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  44005757 aaaccgaaaatcgctaatattactggaga-taaacatacattaaccc 44005712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 49166902 - 49166940
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  49166902 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 49166940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 49533180 - 49533131
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaa 257  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  49533180 atgaaagtccaaaatgaaaaaatcttcaaattacaaggtt-gaaatctaaa 49533131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 23091876 - 23091928
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||| |||||  ||| |||||||||||||||||||||| |||||||||||    
T  23091876 atgaaggttcaaaactaaaaaatcttcaaattacaaggttgg-aatctaaacaa 23091928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 37589620 - 37589653
Alignment:
Q  217 aaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||||||||||||||||||||| ||||||||    
T  37589620 aaaatcaaagaatcttcaaattacatggttggaa 37589653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 18510242 - 18510278
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  18510242 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 18510278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 19376596 - 19376667
Alignment:
Q  170 aggggcaaaagtacctta-aattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 241  Q
    |||||||||||||||||  ||||||||| ||||||| |||  | ||| ||||||||| |||||||||||||||    
T  19376596 aggggcaaaagtaccttttaattttgta-tttgatgtcattgaagtctaaaatcaaataatcttcaaattaca 19376667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 30919175 - 30919211
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  30919175 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 30919211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 40920801 - 40920721
Alignment:
Q  159 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 239  Q
    |||||||||||  ||| ||||  ||||||||||||| ||||||||  ||  || ||||||||| ||||||| |||||||||    
T  40920801 ctcaaattatagtgggtaaaatcaccttaaattttgaaatttgatatcaaaaaagtccaaaattaaagaatattcaaatta 40920721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 112 - 257
Target Start/End: Original strand, 82300 - 82444
Alignment:
Q  112 ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 211  Q
    |||||||  ||||||||||||||||||||||||||||  ||||||||||||||||| | ||||| |||||||||||||||||||||||||||  ||||||    
T  82300 ggtaaaccaaaatatcgatgatatagcagggggtaaaccgaaattctctcaaattacatggggcgaaagtaccttaaattttgtaatttgatatcatgaa 82399  T
Q  212 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaa 257  Q
    |||||||||||||| |||||| |||||| |||| | ||||||||||    
T  82400 ggtccaaaatcaaacaatctttaaatta-aagggttgaaatctaaa 82444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 9235440 - 9235587
Alignment:
Q  112 ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 211  Q
    ||||||| ||||||||||||||||  || ||| ||||   ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  9235440 ggtaaaccgaaatatcgatgatatgtcaagggttaaaccaaaattctttcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaa 9235539  T
Q  212 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||    
T  9235540 ggtccaaaatcaaaaaatcttcaaattacagggtt-gaaatctaaacaa 9235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 111 - 324
Target Start/End: Original strand, 23288999 - 23289212
Alignment:
Q  111 gggtaaactgaaatatcgatgatatagcaggggg---taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 207  Q
    |||| ||| ||||||||||||||||  |||||||   |||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||| ||    
T  23288999 gggtgaaccgaaatatcgatgatatgacaggggggattaaacagaaattctctcaaattacaggggacgaaagtaccttaaattttgtaatttgatgcca 23289098  T
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagat 307  Q
    |||||||||||| | ||| ||||||||||||||| |||||| |||||||||||        |||||||||||||||||||||  ||||||||| || |      
T  23289099 tgaaggtccaaagttaaaaaatcttcaaattacagggttgg-aatctaaacaattttttttacaggggataaaccgaaaatcactaatattacagggg-- 23289195  T
Q  308 taaacatatattaaccc 324  Q
     ||||||||||||||||    
T  23289196 caaacatatattaaccc 23289212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 5600247 - 5600413
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    |||||| ||||||||| || |||||||||||| |||| |||||||||||||||| ||   |||||||||| |||||||| ||||| |||||||||| |||    
T  5600247 aaaatcgataatatggcagagggtaaactgaactatcaatgatatagcaggggg-aatccgaaattctctaaaattata-ggggcgaaagtaccttcaat 5600344  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||| |||||| ||||||| |  ||||| ||| |||||||||||||||||||| ||||| |||||||    
T  5600345 tttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 5600413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 5640373 - 5640207
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    |||||| ||||||||| || |||||||||||| |||| |||||||||||||||| ||   |||||||||| |||||||| ||||| |||||||||| |||    
T  5640373 aaaatcgataatatggcagagggtaaactgaactatcaatgatatagcaggggg-aatccgaaattctctaaaattata-ggggcgaaagtaccttcaat 5640276  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||| |||||| ||||||| |  ||||| ||| |||||||||||||||||||| ||||| |||||||    
T  5640275 tttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 5640207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 13373373 - 13373258
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    ||||||||||||||||||| || |  | ||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||| ||||| |||    
T  13373373 atcgatgatatagcagggg-tacaccggaattctctcaaattacaaggggcaaaaataccttaaattttgtaatttgatgccaggaaggttcaaaaccaa 13373275  T
Q  225 agaatcttcaaattaca 241  Q
    |||||||||||||||||    
T  13373274 agaatcttcaaattaca 13373258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 14698164 - 14698293
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    ||||||||| |||||| | ||||||| |||||||||||||||||| |||||||| |||  |||||| |||||||||| || || ||||||||||||||||    
T  14698164 aaaatcaatgatatggcaaggggtaacctgaaatatcgatgatatggcagggggcaaactgaaattttctcaaattacaaaggacaaaagtaccttaaat 14698263  T
Q  191 tttgtaatttgatgacatgaaggtccaaaat 221  Q
    ||| ||| |||||| |||||||||| |||||    
T  14698264 tttataa-ttgatgccatgaaggtctaaaat 14698293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 24375884 - 24375771
Alignment:
Q  128 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 227  Q
    |||||||| ||||||||||||  ||||||  ||||||||| ||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||| |    
T  24375884 gatgatatggcagggggtaaactgaaatttgctcaaattacaagggacgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaa-caaaaa 24375786  T
Q  228 atcttcaaattacaa 242  Q
    |||||||||||||||    
T  24375785 atcttcaaattacaa 24375771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 24528887 - 24529011
Alignment:
Q  108 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 207  Q
    |||||||||||||||||||||||||||| | ||||||||||  || ||||||| |||||| || |||| ||| ||| ||||||||| |||||||||| ||    
T  24528887 agggggtaaactgaaatatcgatgatatggtagggggtaaaccgagattctctaaaattacaaagggcgaaaatactttaaattttataatttgatgcca 24528986  T
Q  208 tgaaggtccaaaatcaaagaatctt 232  Q
     |||||| |||||| ||| ||||||    
T  24528987 cgaaggtacaaaataaaaaaatctt 24529011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 23245660 - 23245779
Alignment:
Q  128 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 227  Q
    |||||||| ||| ||||||||  |||||| |||||||||| | ||||| |||||||||||||||||  ||||| ||| |||  ||||||||||||||| |    
T  23245660 gatgatatggcaaggggtaaaacgaaattatctcaaattacatggggcgaaagtaccttaaattttaaaatttaatgccatataggtccaaaatcaaaaa 23245759  T
Q  228 atcttcaaattacaaggttg 247  Q
    |||||||||||||| |||||    
T  23245760 atcttcaaattacagggttg 23245779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 11908549 - 11908474
Alignment:
Q  175 caaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||| || ||||||||||||||||| ||||||||    
T  11908549 caaaagtaccttaaattttgaaatttgatgccatgaaggtcctaaaccatagaatcttcaaattacatggttggaa 11908474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 12719249 - 12719159
Alignment:
Q  159 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||||||| ||||||| |||||| | | ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||    
T  12719249 ctcaaattacaaggggcgaaagtatcatcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaat-ttcaaattacaaggatggaa 12719159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 8980741 - 8980803
Alignment:
Q  180 gtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    ||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  8980741 gtaccataaattttgtaatttgatgtcatgaaggtccaaaactaaagaatcttcaaattacaa 8980803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 28786447 - 28786366
Alignment:
Q  178 aagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||| |||| || |||||| |||||||||||||||||||| ||||||| | ||||| |||||| |||||||||||    
T  28786447 aagtaccttaaagtttgaaaattgatgccatgaaggtccaaaatcaaataatcttctagttacagggttgg-aatctaaacaa 28786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 13980023 - 13980076
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  13980023 catgaaggtccaaaatcaaagaatcttcaaattacagggttag-aatctaaacaa 13980076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 10761679 - 10761717
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  10761679 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 10761717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 25653822 - 25653784
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25653822 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 25653784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 28786519 - 28786551
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaatt 238  Q
    |||||||||||||||||||||||||||||||||    
T  28786519 catgaaggtccaaaatcaaagaatcttcaaatt 28786551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 28999510 - 28999546
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28999510 atgaaggtcccaaatcaaagaatcttcaaattacaag 28999546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 24754670 - 24754628
Alignment:
Q  217 aaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  24754670 aaaatcaaagaatcttcaaattacatggttgg-aatctaaacaa 24754628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 9662311 - 9662273
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  9662311 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 9662273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 11830433 - 11830471
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  11830433 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 11830471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 12478831 - 12478869
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  12478831 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 12478869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 13558799 - 13558837
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13558799 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13558837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 32684679 - 32684641
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  32684679 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 32684641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 34845401 - 34845363
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  34845401 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 34845363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 41509497 - 41509459
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  41509497 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 41509459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 11311390 - 11311297
Alignment:
Q  154 attctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttg 247  Q
    |||| ||||||||| ||||| ||||| ||| |||||||||  |||  |||| ||||||  | |||||||| | |||||||||||||||| ||||    
T  11311390 attccctcaaattacaagggacaaaaatacgttaaatttttaaatacgatgtcatgaaaattcaaaatcatataatcttcaaattacaaagttg 11311297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 25057085 - 25057020
Alignment:
Q  178 aagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    ||||| |||| |||||| |||||||||  |||||| | |||||  |||||||||||||||||||||    
T  25057085 aagtatcttacattttgaaatttgatgtgatgaagattcaaaactaaagaatcttcaaattacaag 25057020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 36637251 - 36637288
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  36637251 catgaaggtccaaaatcaaaaaatcttcatattacaag 36637288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 2873708 - 2873744
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  2873708 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 2873744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 34227587 - 34227623
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  34227587 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 34227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 25060033 - 25059885
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||  |||||||||||  ||||| ||||||||||| ||||||| ||| ||||||||||    
T  25060033 aaaatcaatgatatggcagggggtaacctgaaatatcgatgatatgacagggggtaaaccgaaatgctctcaaattacaaggggcgaaaataccttaaat 25059934  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 239  Q
    |||||||||||||| | |||||||||||||||||| ||| || ||||||    
T  25059933 tttgtaatttgatgtcttgaaggtccaaaatcaaaaaatatttaaatta 25059885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 108 - 260
Target Start/End: Original strand, 5469440 - 5469592
Alignment:
Q  108 agggggtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgac 206  Q
    ||||| |||| ||||||||| ||||||||| |||||| ||||  |||||||||||| |||| | ||||||||| |||||||||||||||| ||||||| |    
T  5469440 aggggataaattgaaatatcaatgatatagtaggggggtaaaccgaaattctctcatattacagggggcaaaaataccttaaattttgtagtttgatgcc 5469539  T
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||||||| ||  |||||||||||||||||| |||||||||||    
T  5469540 atgaaggtccaaaatcaaaaaaaattcaaattacaaggttgg-aatctaaacaa 5469592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 13437010 - 13437117
Alignment:
Q  152 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 251  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||| ||    
T  13437010 aaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaatcatcaaattacacggttgg-aa 13437108  T
Q  252 tctaaacaa 260  Q
    |||||||||    
T  13437109 tctaaacaa 13437117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 33864186 - 33864321
Alignment:
Q  125 atcgatgatatagcag-ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatca 223  Q
    ||||||||||| |||| ||||||||  |||||||||  |||||| | | ||| ||| |||||||||||||||||||||||| ||| ||||||||||| ||    
T  33864186 atcgatgatatcgcagaggggtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaacca 33864285  T
Q  224 aagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33864286 aagaatcttcaaattacagggttgg-aatctaaacaa 33864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 33916736 - 33916601
Alignment:
Q  125 atcgatgatatagcag-ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatca 223  Q
    ||||||||||| |||| ||||||||  |||||||||  |||||| | | ||| ||| |||||||||||||||||||||||| ||| ||||||||||| ||    
T  33916736 atcgatgatatcgcagaggggtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaacca 33916637  T
Q  224 aagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33916636 aagaatcttcaaattacagggttgg-aatctaaacaa 33916601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 101 - 260
Target Start/End: Complemental strand, 17890290 - 17890132
Alignment:
Q  101 atatgggagggggtaaactgaaatatcgatgatatagcaggg-ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatt 199  Q
    |||||| | ||||||||||||||||||||||||||  ||  | ||||||  ||||||||||||||||| || || |  ||||||||||||||||||||||    
T  17890290 atatggcaaggggtaaactgaaatatcgatgatatgacatagaggtaaaccgaaattctctcaaattacaatggacggaagtaccttaaattttgtaatt 17890191  T
Q  200 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||  |||| | |||||||| ||| |||||| |||||||| |||||| |||||||||||    
T  17890190 tgatgctatgaggatccaaaat-aaaaaatctttaaattacagggttgg-aatctaaacaa 17890132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 7261487 - 7261587
Alignment:
Q  159 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaac 258  Q
    ||||||||| | ||||  |||||||||| ||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||| |||||| |||||||||    
T  7261487 ctcaaattacaggggggcaaagtaccttcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaatgttcaaattacagggttgg-aatctaaac 7261585  T
Q  259 aa 260  Q
    ||    
T  7261586 aa 7261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 24023179 - 24023289
Alignment:
Q  130 tgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaat 229  Q
    |||||||| ||||| ||||| ||||||| |||||| || ||||||||||| |||||||||||||  ||||||||| | ||||||||||||| |||| |||    
T  24023179 tgatatagtaggggataaatcgaaattcgctcaaaataaaaggggcaaaaataccttaaattttcaaatttgatgtcgtgaaggtccaaaaccaaataat 24023278  T
Q  230 cttcaaattaca 241  Q
    ||| ||||||||    
T  24023279 ctt-aaattaca 24023289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 44078664 - 44078798
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    |||||||||||  ||||||||| |   |||||  |||||  |||| |||||||||||||||||||||||| ||||| |||  | ||||||||||||  ||    
T  44078664 atcgatgatattacagggggtataccaaaatttgctcaatctatagggggcaaaagtaccttaaattttgaaattttatgttaggaaggtccaaaacaaa 44078763  T
Q  225 agaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    || ||||||||||||||||||||| |||||||||||    
T  44078764 aggatcttcaaattacaaggttgg-aatctaaacaa 44078798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 22315282 - 22315145
Alignment:
Q  187 aaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa-nnnnnnnnacaggggataaaccgaa 285  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||         ||||||  ||||||  |    
T  22315282 aaattttgtaatatgatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaatttttttttacagggagtaaaccaga 22315184  T
Q  286 aatcgttaatattactggagattaaacatatattaaccc 324  Q
    ||||| ||||||||| || || |||||||||||||||||    
T  22315183 aatcgctaatattacaggggagtaaacatatattaaccc 22315145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 5882997 - 5883089
Alignment:
Q  160 tcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaat 252  Q
    ||||||||| |||||| |||||||||||||||||  ||||||||| ||||||||| ||||  |||| |||||| |||||||||||||| ||||    
T  5882997 tcaaattatgaggggcgaaagtaccttaaattttaaaatttgatgtcatgaaggtacaaagccaaataatcttaaaattacaaggttgaaaat 5883089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 44228413 - 44228524
Alignment:
Q  128 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 227  Q
    ||||||||  |||||||||||  ||||||  || |||||| | ||||| |||||||||||||||||| ||||||||| || |||||||||||  ||||||    
T  44228413 gatgatatgccagggggtaaaccgaaatttgcttaaattaca-ggggcgaaagtaccttaaattttgaaatttgatgccacgaaggtccaaacccaaaga 44228511  T
Q  228 atcttcaaattac 240  Q
    |||||||||||||    
T  44228512 atcttcaaattac 44228524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 15654132 - 15654059
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||||||| ||||| ||||||||| |  |||||| |||||||||||||| |||||||||||| |||||||    
T  15654132 aaagtaccttaagttttgaaatttgatgtccagaaggttcaaaatcaaagaattttcaaattacaaagttggaa 15654059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 16639659 - 16639555
Alignment:
Q  139 agggggtaaatagaaattctctcaaattataa-ggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 237  Q
    ||||||||||   ||||| |||||||||| || ||||| |||||||| |||||||||||||||||   ||| |||||| |||| ||||||||||| ||||    
T  16639659 agggggtaaaccaaaattttctcaaattacaaaggggcgaaagtaccataaattttgtaatttgacatcataaaggtcaaaaaccaaagaatctttaaat 16639560  T
Q  238 tacaa 242  Q
    |||||    
T  16639559 tacaa 16639555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 22152087 - 22151971
Alignment:
Q  125 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 224  Q
    ||||||||||| | || |||||||  ||||||  || |||||| |  ||||  ||||||| ||||||||| ||||||||| |||||||||||||||  ||    
T  22152087 atcgatgatatggtagagggtaaactgaaatttgcttaaattacagtgggcgtaagtaccataaattttgcaatttgatgtcatgaaggtccaaaacaaa 22151988  T
Q  225 agaatcttcaaattaca 241  Q
    | |||||||||||||||    
T  22151987 aaaatcttcaaattaca 22151971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 23621280 - 23621217
Alignment:
Q  170 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 233  Q
    |||||| ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23621280 aggggcgaaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23621217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 23738059 - 23737996
Alignment:
Q  170 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 233  Q
    |||||| ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23738059 aggggcgaaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23737996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 23652619 - 23652563
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 233  Q
    ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23652619 aaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23652563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 9240580 - 9240531
Alignment:
Q  210 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  9240580 aaggtccaaaatcaaagaatcttcaaattacagggtt-caaatctaaacaa 9240531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 19967820 - 19967858
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  19967820 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 19967858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 9240654 - 9240736
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||||  |||||||||| |||||||||  ||||   |||||||||||| ||||| |||| | |||||||||||    
T  9240654 aaagtaccttaaatttcataatttgatgccatgaaggtttaaaactgaagaatcttcaagttacagggtttg-aatctaaacaa 9240736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 21770981 - 21771019
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21770981 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21771019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 22315365 - 22315288
Alignment:
Q  88 taaaaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaatt 166  Q
    |||||||||||| |||||  ||||| ||  |||||||||||||||||| | ||||||||||  |||||| |||||||||    
T  22315365 taaaaaatcaatgatatgacagggg-taccctgaaatatcgatgatatggaagggggtaaactgaaattttctcaaatt 22315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 23161942 - 23161905
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23161942 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 23161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 26190988 - 26191026
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  26190988 catgaaggtccaaaatcaaaaaatcttcaaattataagg 26191026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 27666174 - 27666212
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27666174 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 27666212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 33864168 - 33864115
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33864168 catgaagattcaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 33864115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 33916754 - 33916807
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33916754 catgaagattcaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 33916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 44228392 - 44228339
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||||||||||| ||||||||||| |||||||| |||| | |||||||||||    
T  44228392 catgaaggtccaaaaccaaagaatctttaaattacagggtt-gtaatctaaacaa 44228339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 6667448 - 6667399
Alignment:
Q  201 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||| | |||| ||||| ||| ||||||||||||||||||||||||    
T  6667448 gatgacatcagggtctaaaatgaaataatcttcaaattacaaggttggaa 6667399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 22387261 - 22387224
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  22387261 catgaaggtccaaaaccaaaaaatcttcaaattacaag 22387224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 15658060 - 15657992
Alignment:
Q  174 gcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 242  Q
    |||| |||||||||| ||||| ||||| ||| || | |||| ||||| ||||||||||||| |||||||    
T  15658060 gcaagagtaccttaagttttgaaatttaatgtcacggaggttcaaaaccaaagaatcttcagattacaa 15657992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 44961264 - 44961300
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  44961264 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 44961300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 9044531 - 9044690
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 190  Q
    |||||| || |||||| | |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||   | ||  |||||| |||||||    
T  9044531 aaaatcgatgatatggcaaggggtaaactgaaatatcgatgatatggcagggggtaaaccaaaattctctcaaattacgggaggtgaaagtatcttaaat 9044630  T
Q  191 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    | | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  9044631 tatataatttgatgccatgaaggtccaaaatcaaataatcttcaaattacaaggttggaa 9044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 25167002 - 25167144
Alignment:
Q  108 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 207  Q
    |||||||||||||||||||||||  ||| || || ||||||  ||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||    
T  25167002 agggggtaaactgaaatatcgatcctatggcgggaggtaaaccgaaattctctcaaattacaagggacgaaagtaccttaaattttgtaatttgatgcca 25167101  T
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    ||||| |||||||||||| |||||||||||||||  |||||||    
T  25167102 tgaagatccaaaatcaaataatcttcaaattacacagttggaa 25167144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 9662835 - 9662968
Alignment:
Q  108 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 207  Q
    |||||||||||  ||||||| |||||||  || ||||||||  ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||    
T  9662835 agggggtaaaccaaaatatcaatgatatgacaaggggtaaactgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgtca 9662934  T
Q  208 tgaaggtccaaaatcaaagaatcttcaaattaca 241  Q
    ||||||| |||||||||| |||||||||||||||    
T  9662935 tgaaggttcaaaatcaaaaaatcttcaaattaca 9662968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 3816681 - 3816552
Alignment:
Q  129 atgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaa 228  Q
    ||||||||||||| ||||||   ||||| |||||||||| | ||||| ||||||||||||||||| |||||||||| ||||||| | ||||| |||||||    
T  3816681 atgatatagcaggaggtaaaccaaaattttctcaaattacagggggcgaaagtaccttaaattttataatttgatgccatgaagattcaaaaccaaagaa 3816582  T
Q  229 tcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||| ||||||  ||||||| |||||||||||    
T  3816581 tctttaaatta-taggttgg-aatctaaacaa 3816552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 20757608 - 20757684
Alignment:
Q  162 aaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 238  Q
    |||||| ||||||| |||||||||||| ||||||||||||||| |||||| | |||||| |||| ||||||||||||    
T  20757608 aaattacaaggggcgaaagtaccttaagttttgtaatttgatgtcatgaacgaccaaaaccaaaaaatcttcaaatt 20757684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 33198670 - 33198608
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 239  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  33198670 aaagtgccttaaattttgtaatttgatgccatgaatgtctaaaaccaaagaatcttcaaatta 33198608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 206 - 324
Target Start/End: Original strand, 3816703 - 3816820
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggag 305  Q
    |||||||||| |||| |||||||||||||||||||| |||| |||||||||||||        ||||||| ||||||  |||||| |||||||||  |||    
T  3816703 catgaaggtcaaaaaccaaagaatcttcaaattacagggtt-gaaatctaaacaattttttttacagggggtaaaccagaaatcgctaatattacatgag 3816801  T
Q  306 attaaacatatattaaccc 324  Q
      ||||||| |||||||||    
T  3816802 gataaacatgtattaaccc 3816820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 6759824 - 6759742
Alignment:
Q  159 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 241  Q
    ||||||||| | ||||  |||||||||||||||||| ||||||||  ||||||  |||||||  |||||||| ||||||||||    
T  6759824 ctcaaattaaagggggtgaaagtaccttaaattttgaaatttgatctcatgaaaatccaaaactaaagaatcatcaaattaca 6759742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 33200018 - 33200067
Alignment:
Q  210 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  33200018 aaggtccaaaatcaaagaatcttcaaattacagggtt-gtaatctaaacaa 33200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 334993 - 334912
Alignment:
Q  177 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    ||||||| ||||||||| |||||| ||| |||||| |||| |||  ||| ||||||||||||||||||||  ||||||||||||    
T  334993 aaagtactttaaattttataatttaatgtcatgaatgtcctaaactaaa-aatcttcaaattacaaggtt-aaaatctaaacaa 334912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 1227934 - 1227972
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  1227934 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 1227972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 2270742 - 2270780
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2270742 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 2270780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 18274361 - 18274403
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaaggttgga 249  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  18274361 atgaaagttcaaaatcaaagaatcttcaaattacagggttgga 18274403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 21544388 - 21544426
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21544388 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21544426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 29942642 - 29942605
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  29942642 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 29942605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 686551 - 686587
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  686551 atgaaggtccaaaatcaaa-aatcttcaaattacaagg 686587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 16119918 - 16119955
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  16119918 catgaaggtccaaaaccaaaaaatcttcaaattacaag 16119955  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 22495817 - 22495780
Alignment:
Q  207 atgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  22495817 atgaaggtccaaaaccaaaaaatcttcaaattacaagg 22495780  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 31174089 - 31174052
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaag 243  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  31174089 catgaaggtctaaaatcaaaaaatcttcaaattacaag 31174052  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 7321876 - 7321840
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7321876 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 7321840  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 12655234 - 12655187
Alignment:
Q  190 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 238  Q
    ||||||||||||||| |||||||||| |||| |||| ||||||||||||    
T  12655234 ttttgtaatttgatg-catgaaggtctaaaaccaaataatcttcaaatt 12655187  T

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Target: scaffold0067 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 25844 - 25960
Alignment:
Q  124 tatcgatgatatagcaggg-ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc 222  Q
    ||||||||||||  ||||| ||||||  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  25844 tatcgatgatatgacagggtggtaaaccgaaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaatc 25943  T
Q  223 aaagaatcttcaaatta 239  Q
    ||| || ||||||||||    
T  25944 aaaaaaccttcaaatta 25960  T

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Target: scaffold0188 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 162 - 324
Target Start/End: Original strand, 13286 - 13447
Alignment:
Q  162 aaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||    
T  13286 aaattacatggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacaaggttgg-aatctaaacaa 13384  T
Q  261 nnnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 324  Q
            ||||||| |||||| ||||||| ||||||||| || |  |||||||||||||||||    
T  13385 atttttttacagggggtaaaccaaaaatcgctaatattacagg-gggtaaacatatattaaccc 13447  T

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Target: scaffold0003 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 306688 - 306762
Alignment:
Q  170 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  306688 aggggcgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaaagaatcttcaaattacaagg 306762  T

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Target: scaffold0110 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 23281 - 23194
Alignment:
Q  151 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 238  Q
    |||||||||||||||||||  ||||  || ||| |||||||||||||||||||| |||||||||| ||||||||| | ||||||||||    
T  23281 gaaattctctcaaattatagagggcggaaatacgttaaattttgtaatttgatgccatgaaggtctaaaatcaaaaagtcttcaaatt 23194  T

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Target: scaffold0142 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 34564 - 34509
Alignment:
Q  195 taatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 250  Q
    |||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||    
T  34564 taatttgatgccatgaaggtccaagatcaaaaaatcttaaaattacaaggttggaa 34509  T

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Target: scaffold0142; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 34993 - 34884
Alignment:
Q  91 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcag-ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaa 189  Q
    |||||| || |||||  |||||||||||||||||||| |||||||  ||| ||||||||   |||| ||||||||||| | ||||  |||||||||||||    
T  34993 aaaatcgatgatatgatagggggtaaactgaaatatctatgatatgacagaggggtaaaccaaaatactctcaaattacatggggagaaagtaccttaaa 34894  T
Q  190 ttttgtaatt 199  Q
    |||| |||||    
T  34893 ttttttaatt 34884  T

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Target: scaffold1462 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 337 - 375
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  337 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 375  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 63149 - 63111
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  63149 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 63111  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 145149 - 145201
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 260  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||    
T  145149 catgaaggtccaaaatcaaa-aatcttcaaattataaggatggaaa-ctaaacaa 145201  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 432513 - 432475
Alignment:
Q  206 catgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  432513 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 432475  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 332324 - 332360
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  332324 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 332360  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 12727 - 12763
Alignment:
Q  208 tgaaggtccaaaatcaaagaatcttcaaattacaagg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  12727 tgaaggtccaaaaccaaaaaatcttcaaattacaagg 12763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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