View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14419_low_4 (Length: 511)

Name: NF14419_low_4
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14419_low_4
NF14419_low_4
[»] chr5 (5 HSPs)
chr5 (342-494)||(11344033-11344183)
chr5 (129-253)||(11343793-11343914)
chr5 (11-67)||(11343675-11343731)
chr5 (457-494)||(11307990-11308027)
chr5 (11-51)||(43379366-43379406)
[»] chr6 (1 HSPs)
chr6 (12-51)||(13208144-13208183)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 342 - 494
Target Start/End: Original strand, 11344033 - 11344183
Alignment:
Q  342 gttctttccactcaattacttcattatataacatgataaccatgattactcttttatttgaagaataaaaagtacatattttcatgctnnnnnnnnnnnn 441  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                
T  11344033 gttctttcccctcaattacttcattatataacatgataaccatgattactcttttatttgaagaataaaaagtacataatttcatgct--tatattatat 11344130  T
Q  442 nnnnnatctcgtcacgcatatacttttagaaattcatccatgcgtgtgtattg 494  Q
         |||||||||||||||| |||||||||||||||||||||||||||||||    
T  11344131 aaataatctcgtcacgcatatgcttttagaaattcatccatgcgtgtgtattg 11344183  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 11343793 - 11343914
Alignment:
Q  129 gccacatgtcacgcagctaagagttggg-taaatggaggtttcataaatggagggaagatgaattccatatacacacaatagagagagaaagaaagaaca 227  Q
    |||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||| ||||||    
T  11343793 gccacatgtcacccatataagagttggggtaaatggaggtttcataaatggagggaagatgaactccatatacacacaat----agagaaagagagaaca 11343888  T
Q  228 tgaataacaaagatggctaaggtttc 253  Q
    ||||||||||||| ||||||||||||    
T  11343889 tgaataacaaagacggctaaggtttc 11343914  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 11343675 - 11343731
Alignment:
Q  11 gaagaagaagaaaggtcgtgtgaagtttgaaccagaagagtaagtgcgtgtgacttc 67  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  11343675 gaagaagaagaaaggtcgtgtgaagtttgaactagaagagtaagtgcgtgtggcttc 11343731  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 11307990 - 11308027
Alignment:
Q  457 gcatatacttttagaaattcatccatgcgtgtgtattg 494  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  11307990 gcatataattttagaaattcatccatgcgtgtgtattg 11308027  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 43379366 - 43379406
Alignment:
Q  11 gaagaagaagaaaggtcgtgtgaagtttgaaccagaagagt 51  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  43379366 gaagaagaagaagggtcgtgtgaactttgaaccagaagagt 43379406  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 13208144 - 13208183
Alignment:
Q  12 aagaagaagaaaggtcgtgtgaagtttgaaccagaagagt 51  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  13208144 aagaagaagaagggtcgtgtgaactttgaaccagaagagt 13208183  T

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