View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14419_low_6 (Length: 494)

Name: NF14419_low_6
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14419_low_6
NF14419_low_6
[»] chr6 (16 HSPs)
chr6 (15-474)||(6394355-6394813)
chr6 (318-469)||(6423010-6423161)
chr6 (275-473)||(14820443-14820641)
chr6 (289-473)||(6589474-6589658)
chr6 (51-222)||(14820140-14820311)
chr6 (313-473)||(19632227-19632387)
chr6 (314-473)||(10579888-10580047)
chr6 (346-473)||(7994333-7994460)
chr6 (261-358)||(14818152-14818248)
chr6 (50-124)||(6426035-6426109)
chr6 (375-473)||(6594757-6594855)
chr6 (272-343)||(6426279-6426350)
chr6 (438-471)||(12102219-12102252)
chr6 (325-385)||(7119002-7119062)
chr6 (325-385)||(7131480-7131540)
chr6 (18-62)||(14820083-14820127)
[»] chr7 (2 HSPs)
chr7 (259-473)||(15092302-15092515)
chr7 (91-136)||(15092659-15092704)
[»] chr1 (3 HSPs)
chr1 (15-257)||(49218728-49218976)
chr1 (275-324)||(49219072-49219121)
chr1 (271-371)||(33160474-33160578)
[»] chr4 (4 HSPs)
chr4 (361-473)||(21834457-21834569)
chr4 (430-470)||(1524637-1524677)
chr4 (426-471)||(553380-553425)
chr4 (430-471)||(570256-570297)
[»] chr3 (2 HSPs)
chr3 (441-473)||(51121044-51121076)
chr3 (440-473)||(51764591-51764624)
[»] chr8 (1 HSPs)
chr8 (430-471)||(21235463-21235504)


Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 474
Target Start/End: Original strand, 6394355 - 6394813
Alignment:
Q  15 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatatta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394355 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatatta 6394454  T
Q  115 actttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactga 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6394455 actttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactaa 6394554  T
Q  215 aatggttgtcaaaaatccatcatccggccatggcctagccttttaaatttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaa 314  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6394555 aatggttgtcaaaaatccaccatccggccatggcctagccttttaaatttgtaaga-tgacattttaaaaaggaaatttctcagagaagtaaatgttgaa 6394653  T
Q  315 acaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcact 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6394654 acaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcact 6394753  T
Q  415 tacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttc 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394754 tacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgttc 6394813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 318 - 469
Target Start/End: Original strand, 6423010 - 6423161
Alignment:
Q  318 aaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttac 417  Q
    |||| |||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||  |||||  |||| | |||||| |||||||||    
T  6423010 aaaacaacttacagtgttcaaactttagcatagaaatttcagaatactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttac 6423109  T
Q  418 atcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccaca 469  Q
    || || ||| ||||||| |||||||||||||||||||||||||  |||||||    
T  6423110 atgaaaatctcccaaataaatctctctcaattgtgtgcagtttaataccaca 6423161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 473
Target Start/End: Original strand, 14820443 - 14820641
Alignment:
Q  275 cattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatac 374  Q
    ||||||||||||| || |||| ||||| |||||| || ||||||||| |||||||||||||||||||||||||  ||||||||| |||||||||||| |     
T  14820443 cattttaaaaaggcaaattctcagagatgtaaatcttaaaacaaaaacaacttacagtgttcaaacttcagcaacgcaatttcataatactagcaaagat 14820542  T
Q  375 ggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 473  Q
    | |||||||||||| | |  |||| |||| ||| |  ||||| || ||   || ||||||||||||||||||  ||||||||||||| |||||||||||    
T  14820543 gacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaaccccgccaaattaatctctctcagctgtgtgcagttttttaccacatgtt 14820641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 289 - 473
Target Start/End: Complemental strand, 6589658 - 6589474
Alignment:
Q  289 aatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgc 388  Q
    ||||||| |||||||| ||| || ||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||| ||| | |||||||| || |     
T  6589658 aatttctcagagaagtgaatattaaaacaaaaacaacttacagtgttcatactttagcacagcaatttcagaatactagtaaagatggcatccatgatgg 6589559  T
Q  389 aagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 473  Q
     |||  | ||||||| ||| |||||||| || ||||||||||| || |||||||   | | ||||||||||||||||||||||||    
T  6589558 gagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttttctaccacatgtt 6589474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 14820140 - 14820311
Alignment:
Q  51 atcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatattaactttcaagttggattaaaatacaaagtaagtttga 150  Q
    |||||||||||||||||||||||||||||||||||| || |||  | |||||||||  |||||| ||||||||||| || |||||| ||| |||||||||    
T  14820140 atcatacttcaaacacatatcattaatcaattcataagctatacacattatttactatatattagctttcaagttgaatcaaaatataaattaagtttga 14820239  T
Q  151 ctgcagagttgcgacttatgacgctgccatgttgggcatcggcattatttcacaaattgactgaaatggttg 222  Q
    |  | |||||||||||| || ||| ||||| || |||||| |||||  || |||||||||||  ||||||||    
T  14820240 ccactgagttgcgacttttggcgccgccatattaggcatcagcattcctttacaaattgactacaatggttg 14820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 313 - 473
Target Start/End: Original strand, 19632227 - 19632387
Alignment:
Q  313 aaacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtca 412  Q
    ||||||||| ||||||||| ||||||||||||  |||||| |||| ||||||||||||| | |||||||| ||||||||   |||| |||| ||| ||||    
T  19632227 aaacaaaaacaacttacagggttcaaacttcataatagcattttcggaatactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtca 19632326  T
Q  413 cttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 473  Q
    |||  || |||||||||||||| ||||||  ||| |||| |||||||||||||||| ||||    
T  19632327 cttgaatgaatatcccccaaataaatctccttcagttgtttgcagttttctaccacgtgtt 19632387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 473
Target Start/End: Complemental strand, 10580047 - 10579888
Alignment:
Q  314 aacaaaaagaacttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattt-tcgtca 412  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||||| | |||||||| |||||||||  | | |||||||| || ||     
T  10580047 aacaaaaacaacttacagagttcaaacttcagcgtagcatttttagaatactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc- 10579949  T
Q  413 cttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 473  Q
    |||| ||| | |||  |||| | ||||||||| | ||||||||||||||||||||||||||    
T  10579948 cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagttttctaccacatgtt 10579888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 473
Target Start/End: Complemental strand, 7994460 - 7994333
Alignment:
Q  346 catagcaatttcagaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctc 445  Q
    ||||| ||||||||||||||| || ||| |||||||  ||||| |||  ||||||||||||| |||||||| || || |||||| |||| ||||||| ||    
T  7994460 catagaaatttcagaatactaacagataaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttc 7994361  T
Q  446 aattgtgtgcagttttctaccacatgtt 473  Q
    | ||| ||||||||||||||||||||||    
T  7994360 agttgcgtgcagttttctaccacatgtt 7994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 14818152 - 14818248
Alignment:
Q  261 atttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 358  Q
    ||||||||||| | ||||||||||||| || |||| | ||| |||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||    
T  14818152 atttgtaagat-gtcattttaaaaaggcaaattctcaaagatgtaaatcttaaaacaaaaacaacttacagtgttcaaacttcagcaaagcaatttca 14818248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 6426035 - 6426109
Alignment:
Q  50 tatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttcatattaactttcaagt 124  Q
    ||||| |||||||||||||||||||| |||||||||| || |||||||||||||  ||||||||| |||||||||    
T  6426035 tatcacacttcaaacacatatcattagtcaattcataagctatatgccttattttgttcatattagctttcaagt 6426109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 473
Target Start/End: Complemental strand, 6594855 - 6594757
Alignment:
Q  375 ggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttttctaccacatgtt 473  Q
    ||||||| |||||| |||  ||||||||| |||||||||||| || |  | ||| |||||  || ||||||||||||||||||||||||||||||||||    
T  6594855 ggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccacatgtt 6594757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 6426279 - 6426350
Alignment:
Q  272 tgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttc 343  Q
    ||||||||||||||||  |||||| ||||||||||||  | ||||||||| |||||||| ||||||||||||    
T  6426279 tgacattttaaaaaggctatttctcagagaagtaaatcataaaacaaaaacaacttacaatgttcaaacttc 6426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 12102219 - 12102252
Alignment:
Q  438 tctctctcaattgtgtgcagttttctaccacatg 471  Q
    ||||||||| ||||||||||||||||||||||||    
T  12102219 tctctctcagttgtgtgcagttttctaccacatg 12102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 7119002 - 7119062
Alignment:
Q  325 cttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacga 385  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||||| | | |||||||||    
T  7119002 cttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7119062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 7131480 - 7131540
Alignment:
Q  325 cttacagtgttcaaacttcagcatagcaatttcagaatactagcaaatacggcatccacga 385  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||||| | | |||||||||    
T  7131480 cttacagtgtttaaacttcaacatagcaattaaataatactagcaaagaagacatccacga 7131540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 14820083 - 14820127
Alignment:
Q  18 tacacatattatcaagttaaacatacttgagttatcatacttcaa 62  Q
    |||||||| ||||||||||||||| || ||||| |||||||||||    
T  14820083 tacacataatatcaagttaaacattctagagttttcatacttcaa 14820127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 259 - 473
Target Start/End: Complemental strand, 15092515 - 15092302
Alignment:
Q  259 aaatttgtaagattgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 358  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15092515 aaatttgaaagat-gacattttaaaaaggaaatttctcagagaagtaaatcttgaaacaaaaagaacttacagtgttcaaacttcagcatagcaatttca 15092417  T
Q  359 gaatactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagt 458  Q
    ||||||||||||||| |||||||||||||| |||  |||| |||| ||| |||||||||||  |||| || |||||||||||||||||||||||||||||    
T  15092416 gaatactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagt 15092317  T
Q  459 tttctaccacatgtt 473  Q
    |||||| ||||||||    
T  15092316 tttctagcacatgtt 15092302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 15092704 - 15092659
Alignment:
Q  91 atatgccttatttacttcatattaactttcaagttggattaaaata 136  Q
    ||||||||||||||||| |||||| ||||||||||| || ||||||    
T  15092704 atatgccttatttactttatattagctttcaagttgaatcaaaata 15092659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 49218728 - 49218976
Alignment:
Q  15 aggtacacatattatcaagttaaacatacttgagttatcatacttcaaacacatatcattaatcaattcatatgccatatgccttatttacttca----- 109  Q
    |||| |||||||||||||||||||| ||  |||||||||||||  |||| |||||||||||||||||||||| || |||||||||||||||||||         
T  49218728 aggtgcacatattatcaagttaaacttatatgagttatcataccccaaatacatatcattaatcaattcataagctatatgccttatttacttcacttca 49218827  T
Q  110 tattaactttcaagttggattaaaatacaaagtaagtttgactgcagagttgcgacttatgacgctgccatgttgggcatcggcatt-atttcacaaatt 208  Q
    ||| | ||||||||||| || ||||| |||| || | ||||| || || ||||||| |||  |||||||||| ||||||||||||||    ||| |||||    
T  49218828 tatcagctttcaagttgaataaaaattcaaattatgcttgacagctgaattgcgacatatagcgctgccatggtgggcatcggcattccaatcataaatt 49218927  T
Q  209 gactgaaatggttgtcaaaaatccatcatccggccatggcctagccttt 257  Q
    ||||| ||||||||| ||| |||| ||||||  ||||||| ||||||||    
T  49218928 gactgcaatggttgttaaacatccgtcatcctaccatggcgtagccttt 49218976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 49219072 - 49219121
Alignment:
Q  275 cattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaa 324  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49219072 cattttaaaaaggaaatttcttagagaagtaaatcttgaaacaaaaagaa 49219121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 33160474 - 33160578
Alignment:
Q  271 ttgacattttaaaaaggaaatttcttagagaagtaaatgttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatacta 366  Q
    ||||||||||||||| | ||||||| |||||||||||| || || |||||| ||||||||  ||||    |||||| ||||||||| ||||| |||||||    
T  33160474 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagcactttcataatacta 33160573  T
Q  367 gcaaa 371  Q
    |||||    
T  33160574 gcaaa 33160578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 473
Target Start/End: Complemental strand, 21834569 - 21834457
Alignment:
Q  361 atactagcaaatacggcatccacgacgcaagagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 460  Q
    ||||||||||| | |||||||||||||| |||  | || ||| ||||||||||||| ||  | ||||||||||||||| ||||||| |||||| ||  ||    
T  21834569 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtcacttaaatgcaaatcccccaaattaatttctctcagttgtgtacatctt 21834470  T
Q  461 tctaccacatgtt 473  Q
    ||||||| |||||    
T  21834469 tctaccatatgtt 21834457  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 470
Target Start/End: Complemental strand, 1524677 - 1524637
Alignment:
Q  430 caaattaatctctctcaattgtgtgcagttttctaccacat 470  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  1524677 caaattaatctctctcagttgtgtgcagttttctatcacat 1524637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 553380 - 553425
Alignment:
Q  426 cccccaaattaatctctctcaattgtgtgcagttttctaccacatg 471  Q
    |||||||||  |||||||| | ||||||||||||||||||||||||    
T  553380 cccccaaatcgatctctctaagttgtgtgcagttttctaccacatg 553425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Original strand, 570256 - 570297
Alignment:
Q  430 caaattaatctctctcaattgtgtgcagttttctaccacatg 471  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  570256 caaattgatctccctcagttgtgtgcagttttctaccacatg 570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 51121076 - 51121044
Alignment:
Q  441 ctctcaattgtgtgcagttttctaccacatgtt 473  Q
    |||||||||||||||||||||||||||||||||    
T  51121076 ctctcaattgtgtgcagttttctaccacatgtt 51121044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 51764624 - 51764591
Alignment:
Q  440 tctctcaattgtgtgcagttttctaccacatgtt 473  Q
    ||||||||||||||||||||||| ||||||||||    
T  51764624 tctctcaattgtgtgcagttttcaaccacatgtt 51764591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Original strand, 21235463 - 21235504
Alignment:
Q  430 caaattaatctctctcaattgtgtgcagttttctaccacatg 471  Q
    |||||| ||||| |||| ||||||||||||||||||||||||    
T  21235463 caaattgatctccctcagttgtgtgcagttttctaccacatg 21235504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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