View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_8 (Length: 455)
Name: NF14419_low_8
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 24725196 - 24725388
Alignment:
| Q |
1 |
aaacttcaattggtaggctaaatctatgaatagatcggaagagacaaaacatatattaggccacaaaaaccgtttatgnnnnnnnctttggcaattttgt |
100 |
Q |
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| T |
24725196 |
aaacttcaattgataggctatatctatgaacagatcggaagagacaaaacatatattagaccacaaaaaccgtttttgtttttt-ctttggcaattttgt |
24725294 |
T |
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| Q |
101 |
aaaagttaaattatagggattcagttcaaccgccaccaaaatttaagcaatcacattcatatcattttaacccgttaatagaaacatgaacatt |
194 |
Q |
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| T |
24725295 |
aaaagttcaattatagggtttccgttcaaccgccaccaaaatttaagcaatcacattcatatcattttaaccagttaatagaaacatgaacatt |
24725388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 280 - 441
Target Start/End: Original strand, 24725478 - 24725642
Alignment:
| Q |
280 |
ataaaaagaagtgatcaattggatttcatcccaaaaatatctgttgnnnnnnn-aaaatgttggatgcattcaatcaacccatattattcctttgacttc |
378 |
Q |
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| T |
24725478 |
ataaaaagaagtcatcaattggatttcatcccaaaaatatttgttgtattttttaaaatgttggatgcattgaatgaacccatattattcttttgatttc |
24725577 |
T |
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| Q |
379 |
gactataatgaatggaggcaaaatcatttgttttgtctctctgc--taacttaaatgctcctttg |
441 |
Q |
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| T |
24725578 |
cactataatgaatggaggcaaaatcatttgttctgtctctctgctgtaacttaaatgctcctttg |
24725642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8157572 - 8157631
Alignment:
| Q |
1 |
aaacttcaattggtaggctaaatctatgaatagatcggaagagac-aaaacatatattag |
59 |
Q |
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| T |
8157572 |
aaacttcaattggtaggctatatctatgaacagatcagaagagacaaaaacatatattag |
8157631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 15134681 - 15134758
Alignment:
| Q |
366 |
ttcctttgacttcgactataatgaatggaggcaaaatcatttgttttgtctctctgc--taacttaaatgctcctttg |
441 |
Q |
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||||||||| ||| ||||| || | ||||||||||||| |||||| ||||||||||| |||||||| ||||| |||| |
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| T |
15134681 |
ttcctttgatttccactatgatcagtggaggcaaaatcctttgttctgtctctctgctgtaacttaattgctcttttg |
15134758 |
T |
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