View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14419_low_9 (Length: 451)
Name: NF14419_low_9
Description: NF14419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14419_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 433
Target Start/End: Complemental strand, 6984430 - 6984013
Alignment:
| Q |
20 |
attgtagcaactaaaaaccaaaatttaaacttaggttcataaacaaacactcacattg------tcattcttgttcaaaccagcgtaaggaacaaaatgc |
113 |
Q |
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| T |
6984430 |
attgtagcaactacaaaccaaaatttaaacctaggttcataaacaaacactcacattgatatcatcattattgttcaaaccagcgtaaggaacaaaatgc |
6984331 |
T |
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| Q |
114 |
tgccagaatctcgataccccatttcgctcaaacgtttcctgcagccaaaaggatcaataaaaattcaaactttgtaatgtaaaaagtgaaagaggttaaa |
213 |
Q |
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| T |
6984330 |
tgccaaaacctcaatgccccatttcgctcaaacgtttcctgcgggcaaaggggtcaataaaa-ttcaaactttgtaatgtaaaaagtgaaagag-ttaaa |
6984233 |
T |
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| Q |
214 |
tttatagacactcaaagtgaaatggtttgttgagtatgatcgaacctctaggacattgagaaagtggtgagtgaggagtgattgtaggccgtgtttggag |
313 |
Q |
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| T |
6984232 |
tttatatacactcaaagtgaaatggtttgttgagtatgatcgaacctctaagactttgagaaagtggggagtgaggagtgattgtaggccgtgtttgcag |
6984133 |
T |
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| Q |
314 |
agggtgtgaacgtgagaaacaaattgatgagtagtgaatgagaggtgatcgtggagaagaagagattgtgtggcgttgcagaatgcgttgtagctttcaa |
413 |
Q |
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| T |
6984132 |
agggtgtgaacgtgagaaacaaattgatgagtagtgaatgagatgtgatcgtggagaagaagagattgtgtggcgttgcagaaggcgttgtagctttcaa |
6984033 |
T |
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| Q |
414 |
ggatttcgttaacttcatct |
433 |
Q |
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| T |
6984032 |
tgatttcgttaacttcatct |
6984013 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 31965318 - 31965410
Alignment:
| Q |
94 |
cagcgtaaggaacaaaatgctgccagaatctcgataccccatttcgctcaaacgtttcctgcagccaaaaggatcaataaaaattcaaacttt |
186 |
Q |
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| T |
31965318 |
cagcataaggaacaaaatgccgccaaaacctcgatgacccatttcgttcaaaagtttcctacaaccaaagaaatcaataaaaattcatacttt |
31965410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 31901459 - 31901551
Alignment:
| Q |
94 |
cagcgtaaggaacaaaatgctgccagaatctcgataccccatttcgctcaaacgtttcctgcagccaaaaggatcaataaaaattcaaacttt |
186 |
Q |
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| T |
31901459 |
cagcataaggaacaaaatgccgccaaaacctcgatgacccgtttcgttcaaaagtttcctacaaacaaagaaatcaataaaaattgaaacttt |
31901551 |
T |
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