View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441A-Insertion-1 (Length: 984)

Name: NF1441A-Insertion-1
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441A-Insertion-1
NF1441A-Insertion-1
[»] chr8 (3 HSPs)
chr8 (8-659)||(21271686-21272344)
chr8 (698-763)||(21272343-21272408)
chr8 (913-978)||(18975080-18975146)
[»] chr6 (1 HSPs)
chr6 (15-66)||(6807814-6807865)
[»] scaffold0050 (1 HSPs)
scaffold0050 (12-50)||(76065-76103)
[»] chr1 (1 HSPs)
chr1 (9-42)||(15968107-15968140)
[»] chr5 (3 HSPs)
chr5 (873-909)||(1581247-1581283)
chr5 (873-909)||(1603532-1603568)
chr5 (13-66)||(27073765-27073818)
[»] chr7 (2 HSPs)
chr7 (913-978)||(5330728-5330794)
chr7 (873-916)||(39615686-39615729)
[»] chr3 (1 HSPs)
chr3 (154-227)||(10815677-10815751)
[»] chr2 (2 HSPs)
chr2 (162-228)||(23693061-23693127)
chr2 (13-66)||(3531391-3531443)


Alignment Details
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 8 - 659
Target Start/End: Original strand, 21271686 - 21272344
Alignment:
Q  8 ttattgactataaataccaaccttgagagcattcttagggcatctcataaacaatctaaccctagtctgatagtcctactttctgcactacctcatttaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  21271686 ttattgactataaataccaaccttgagagcattcttagggcatctcataaacaatctaaccctagtctgatagtcgtactttcttcactacctcatttaa 21271785  T
Q  108 aaaaccataacacataacacataaaatctgagtcgcatccttctccactacctcatcgccatgaagaccgaatcctcaaatcacgacaccgtcgaggcga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  21271786 aaaaccataacacataacacataaaatctgagtcgcatccttctccactacctcatcgccatgatgaccgaatcctcaaatcacgacaccatcgaggcga 21271885  T
Q  208 taaaaattcaaatcgcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataaagctagccagattgatcaagttg 307  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21271886 taaaaattcaaatctcacaaaaccaacatcaacatcaacttcaatttttctacggagcaatcagatgactaacataaagctggccagattgatcaagttg 21271985  T
Q  308 ttctttaattacgagaataatccaggtgccaaaatcccatgttacgt--gaatacgcttgattaggcggccttgttcagaaatattgatcctatgaagat 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21271986 ttctttaattacgagaataatccaggtgccaaaatcccatgttacgtgagaatacgcttgattaggcggccttgttcagaaatattgatcctatgaagat 21272085  T
Q  406 gacgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttat-----cacgtggtgctttaattttgaattcatatttgccatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     ||||||||||||||||||||||||||||||||||||||    
T  21272086 gacgccagatacctcgaaatccaggttttatgagtccaatattattcaagtgtttgtcgatgcacgtggtgctttaattttgaattcatatttgccatat 21272185  T
Q  501 ttaaattgatcagcacatgataccttgaaaaattccaaaaggcacttaatcctatcggcagtgatattaagtggttttgttttcaatctaaattgccttt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21272186 ttaaattgatcagcacatgataccttgaaaaattccaaaaggcacttaatcctatcggcagtgatattaagtggttttgttttcaatctaaattgccttt 21272285  T
Q  601 gttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttta 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21272286 gttttgacatattttcaagtcgagtcattggaattattcatagtggaaaatcagcttta 21272344  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 698 - 763
Target Start/End: Original strand, 21272343 - 21272408
Alignment:
Q  698 tatttcacattcaatatgatgggtgtagaaaaaggtcctctttcgtctgtaggtaatgtatataaa 763  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21272343 tatttcacattcaatatgatgggtgtagaaaaaggtactctttcgtctgtaggtaatgtatataaa 21272408  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 978
Target Start/End: Original strand, 18975080 - 18975146
Alignment:
Q  913 ctttattatcttgagaaggaacattcgacttaga-tttccatatgttgcag-ttttgctttctttcat 978  Q
    |||||||| |||||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||||    
T  18975080 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcat 18975146  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 6807814 - 6807865
Alignment:
Q  15 ctataaataccaaccttgagagcattcttagggcatctcataaacaatctaa 66  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||| |||||    
T  6807814 ctataaatactaaccttgagagcactctcagggcatctcataaacagtctaa 6807865  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 76103 - 76065
Alignment:
Q  12 tgactataaataccaaccttgagagcattcttagggcat 50  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  76103 tgactataaatactaaccttgagagcattcttagggcat 76065  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 15968107 - 15968140
Alignment:
Q  9 tattgactataaataccaaccttgagagcattct 42  Q
    ||||||||||||||||||||||||||||||||||    
T  15968107 tattgactataaataccaaccttgagagcattct 15968140  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 909
Target Start/End: Original strand, 1581247 - 1581283
Alignment:
Q  873 agctataaacttgtttatttgtgtctgcatttaactg 909  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1581247 agctataaacttgtttatttgtttctgcatttaactg 1581283  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 909
Target Start/End: Complemental strand, 1603568 - 1603532
Alignment:
Q  873 agctataaacttgtttatttgtgtctgcatttaactg 909  Q
    |||||||||||||||||||||| ||||||||||||||    
T  1603568 agctataaacttgtttatttgtttctgcatttaactg 1603532  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27073765 - 27073818
Alignment:
Q  13 gactataaataccaaccttgagagcattcttagggcatctcataaacaatctaa 66  Q
    |||||||||||||| ||||||||||||||| | ||||||| |||| || |||||    
T  27073765 gactataaataccacccttgagagcattctcaaggcatctaataatcagtctaa 27073818  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 978
Target Start/End: Complemental strand, 5330794 - 5330728
Alignment:
Q  913 ctttattatcttgagaaggaacattcgacttaga-tttccatatgttgcag-ttttgctttctttcat 978  Q
    |||||||| |||||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||||    
T  5330794 ctttattagcttgagaaggaacattggacttagattttccatatatt-cagattttgctttctttcat 5330728  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 873 - 916
Target Start/End: Complemental strand, 39615729 - 39615686
Alignment:
Q  873 agctataaacttgtttatttgtgtctgcatttaactggtacttt 916  Q
    |||||||||||||||||||| | ||||||||||||| |||||||    
T  39615729 agctataaacttgtttatttctttctgcatttaactagtacttt 39615686  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 10815751 - 10815677
Alignment:
Q  154 actacctcatcgcc-atgaagaccgaatcctcaaatcacgacaccgtcgaggcgataaaaattcaaatcgcacaa 227  Q
    |||||||||||||| |||| || |||||||||  |||||||| ||||| |||| || ||| ||||||||||||||    
T  10815751 actacctcatcgcccatgatgatcgaatcctccgatcacgacgccgtcaaggctatgaaacttcaaatcgcacaa 10815677  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 23693061 - 23693127
Alignment:
Q  162 atcgccatgaagaccgaatcctcaaatcacgacaccgtcgaggcgataaaaattcaaatcgcacaaa 228  Q
    ||||||| || ||||||||||||  |||||||| ||||| |||| || ||| |||||||||||||||    
T  23693061 atcgccacgatgaccgaatcctccgatcacgacgccgtcaaggctatgaaacttcaaatcgcacaaa 23693127  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 3531443 - 3531391
Alignment:
Q  13 gactataaataccaaccttgagagcattcttagggcatctcataaacaatctaa 66  Q
    |||||||||||||| |||||||| |||||| | ||||||||||||||| |||||    
T  3531443 gactataaatacca-ccttgagatcattctcaaggcatctcataaacagtctaa 3531391  T

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