View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-10 (Length: 716)
Name: NF1441A-Insertion-10
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Original strand, 39392428 - 39392928
Alignment:
| Q |
8 |
ccaacaaatctagcaggactaaaccgtttaagatcaacaatggtggaatgaccatcaagtacaagctcagcaacagcagctccagtggcagggccattga |
107 |
Q |
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| T |
39392428 |
ccaacaaatctagcaggactaaaccgtttaagatcaacaatggtggaatgaccatcaagtacaagctcagcaacagcagctccagtggcagggccattga |
39392527 |
T |
|
| Q |
108 |
gaataccccagcaactatgtcctgtcgctacatagcaacctttcacaccaggaacctctcctataatcggcacgccatcatcggtacacggcaaaaagca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39392528 |
gaataccccagcaactatgtcctgtcgctacatagcaacctttcacaccaggaacctctcctataatcggcacgccatcatcggtacatggcaaaaagca |
39392627 |
T |
|
| Q |
208 |
cgcttgctccaccttcactccttcttccccgagatggcttgatacggtcttagctaccctcttcagcatcgcaattgattcttcgttaccccttatctcc |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39392628 |
cgcttgctccaccttcactccttcttccccgagatggcttgatacggtcttagctaccctcttcagcatcgcaattgattcttcgttaccccttatctcc |
39392727 |
T |
|
| Q |
308 |
tctggatcatcaggtacctcttcctcctttgacatcccacacacatatacctctcctgaaggagnnnnnnnnncattagtatttattaatggcttagtta |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39392728 |
tctggatcatcaggtacctcttcctcctttgacatcccacacacatatacctctcctgaaggag-aaaaaaaacattagtatttattaatggcttagtta |
39392826 |
T |
|
| Q |
408 |
tatattacttttagatttcacttttgtgccaatggcaacttcaaataaacaacaataatttctaagagcatttggaccgtttcatttttaagtagtattc |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
39392827 |
tatattacttttagatttcacttttgtgccaatggcaacttcaaataaacaacaataatttctaagaacatttggaccatttcatttttaagtagtattc |
39392926 |
T |
|
| Q |
508 |
aa |
509 |
Q |
| |
|
|| |
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|
| T |
39392927 |
aa |
39392928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 575 - 716
Target Start/End: Original strand, 39392994 - 39393130
Alignment:
| Q |
575 |
gccaatgttagtttattatgacgatcgagccgaaacctcatcttttaaactctttcaacgttccttagttcatcaaccaaacaaccaatacgggatccct |
674 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
39392994 |
gccaatgttagtttat---gacgatcgagccgaaacctcatcttttaaactctttcaatgttccttagttcatcaaccaaacaaccaatgctggatccct |
39393090 |
T |
|
| Q |
675 |
taannnnnnnnnnnatagacatttggtttgtttatgtcaatt |
716 |
Q |
| |
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||| |||||||||||||||||||||||||||| |
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|
| T |
39393091 |
taa--tttttttttatagacatttggtttgtttatgtcaatt |
39393130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 91 - 336
Target Start/End: Original strand, 30754159 - 30754401
Alignment:
| Q |
91 |
agtggcagggccattgagaataccccagcaactatgtcctgtcgctacatagcaacctttcacaccaggaacctctcctataatcggcacgccatcatcg |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
30754159 |
agtggcaggaccattgagaataccccagcaactatgtcccgtcgctacataacagcctttcaccccaggaatctctcctataatcggcacgccatcatct |
30754258 |
T |
|
| Q |
191 |
gtacacggcaaaaagcacgcttgctccaccttcactccttcttccccgagatggcttgatacggtcttagctaccctcttcagcatcgcaattgattctt |
290 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30754259 |
gtgcacggcaaaaagcacgcttgctccaccttcactc---cttccccgagatggcttgatacggtcttagctacccttttcagcatcgcaattgattcac |
30754355 |
T |
|
| Q |
291 |
cgttaccccttatctcctctggatcatcaggtacctcttcctcctt |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30754356 |
tgttaccccttatctcctctggatcatcaggtacctcttcctcctt |
30754401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 30754118 - 30754161
Alignment:
| Q |
24 |
gactaaaccgtttaagatcaacaatggtggaatgaccatcaagt |
67 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30754118 |
gactaaaccgtttaagatcaacaatggtggaatgaccatcaagt |
30754161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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