View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-12 (Length: 703)
Name: NF1441A-Insertion-12
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 7 - 703
Target Start/End: Complemental strand, 4179922 - 4179219
Alignment:
| Q |
7 |
aatttttggttgaccaaaacctctgccaagaggaggctacaactaatgccgattgagtatcctccacatttgaagtttgtcacctgaagnnnnnnnccac |
106 |
Q |
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| T |
4179922 |
aatttttggtttaccaaaacctctgccaagaggaggctacaacaaatgccgattgagtatcctccacatttgaagtttgtcacctgaagaaaaaaaccac |
4179823 |
T |
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| Q |
107 |
atctacaaattaaattgtatatctgatcaaactcaaattcattaacag-----atacattggacccagtataatcgactttatggtgcgggtcggttgta |
201 |
Q |
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| T |
4179822 |
atctacaaattaaattgtatatctgatcaaactcaaattcattaacaggtacgatacattggacccagtataatcaactttatggtgcgggtcggttgta |
4179723 |
T |
|
| Q |
202 |
gaccattagattaagagagatagatattatctctcttaatctaatgaacaacaatcgactgcaacctaaaacgactatagatgatctaggtttgatatat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4179722 |
gaccattagattaagagagatagatattatctctcttaatctaatgaacaacaatcgactgcaacctaaaacaactatagatgatctaggtttgatatat |
4179623 |
T |
|
| Q |
302 |
gctacctcaacatgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattgg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179622 |
gctacctcaacatgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagaggggagagaacagaggaaattgg |
4179523 |
T |
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| Q |
402 |
ccatcaatttcattccagaaaacaaggtgagcctcatgatcatcatcgtgttcatttttattcgagtcaaggaactcagataagcttgtagggtaatgag |
501 |
Q |
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| T |
4179522 |
ccatcaatttcattccagaaaacaaggcgagcctcatgatcatcatcgtgttcatttttattcgactcaaggaactcagataagcttgtagggtaatgag |
4179423 |
T |
|
| Q |
502 |
cctctaatagtcgaattccagaatcattagacacaatttccaatcctgttatgtcccttttttggactcgaccagctagtagaggatgatccaat-acgc |
600 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || |
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| T |
4179422 |
cctctaagagtcgaattccagaatcattagacacaatttccaatcctgttatgtcccttttttggactcgaccagccagtagaggatgatccaataaggc |
4179323 |
T |
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| Q |
601 |
cctagcaagtgattccacaatccaaccagttaa-gaccaatcatgatcctcctcttcaaccttctcatagtacaataccatttggtagcatccctcaatt |
699 |
Q |
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| T |
4179322 |
cctagcaagtgattccacaatccaaccagttaaggaccaatcatgatcctcctcttcaaccttctcatagtacaataccatttggtagcatccctcaatt |
4179223 |
T |
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| Q |
700 |
gtcc |
703 |
Q |
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|||| |
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| T |
4179222 |
gtcc |
4179219 |
T |
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