View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1441A-Insertion-13 (Length: 747)
Name: NF1441A-Insertion-13
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-13 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Original strand, 228207 - 228796
Alignment:
| Q |
8 |
tcaatctccaaacttgtgttaccaattctcttgttactaacaatttttgttgcttttcagttcaagggtggcgaaagcggtttatttcatgataaagtac |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
228207 |
tcaatctccaaacttgtgttaccaattctcttgttactaacaattcttgttgcttttcagttcaagggtggcgaaagcgggttatttcatgataaagtac |
228306 |
T |
|
| Q |
108 |
acatgcatattttcaacaacttaaccaatggtgttaagctcactgtccactgtaaggacaaagatcatgatattggagctcaaacactaaattttggaga |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
228307 |
acatgcatattttcaacaacttaaccaatggtgttaagctcactgtccactgtaaggacaaagatcatgatattggagctcaaacactaaattttggaga |
228406 |
T |
|
| Q |
208 |
atcttacaacttcgtttttaggcctggtaccgtagttgaatctaccttatacttttgtggatttagatttaatactgaatttcactactttgacgtttac |
307 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
228407 |
atcttacaactttgtttttaggcctggtaccatagttgaatctaccttatacttttgtggatttagatttaatactgaattttacatctttgacgtttac |
228506 |
T |
|
| Q |
308 |
gatcaaaaacgagatgannnnnnngtcggaaaagattgtcactgggaagtacatgaatcagggccatgtaggcttaatgttctggataagccaaactcaa |
407 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
228507 |
gatcaaaaacgagatgatttttttgtcggaaaagattgtcgctgggaagtacatgaatcagggccatgtaggcataatgttgtggataagccaaactcaa |
228606 |
T |
|
| Q |
408 |
tagaatgcttcccatggaatccttaatgtttttatagaagggagggatctcatagaagagaataatacttttaatgtgtatcagtgtattcctccttgaa |
507 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
228607 |
tagaatgcttcccatggaa--------------atagaaaggagggatctcagagaatagaataatacttttaatgtgtatcagtgtattcctccttgaa |
228692 |
T |
|
| Q |
508 |
attatatgagatgaagaataaaaatattatatcatatgattttctatagttaatagtcatatttaccattacaaagtgtgagtacgatcttcctttcttc |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
228693 |
attatatgagatgaagaataaaaatattatatcatatgattttctatagttaataatcatatttaccattacaaagtgtgagtacgatcttcctttcttc |
228792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 238693 - 238218
Alignment:
| Q |
8 |
tcaatctccaaacttgtgttaccaattctcttgttactaacaatttttgttgcttttcagttcaagggtggcgaaagcggtttatttcatgataaagtac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
238693 |
tcaatctccaaacttgtgttaccaattctcttgttactaataatttttgttgcttttcagttcaagggtggcgaaagcgggttatttcatgataaagtac |
238594 |
T |
|
| Q |
108 |
acatgcatattttcaacaacttaaccaatggtgttaagctcactgtccactgtaaggacaaagatcatgatattggagctcaaacactaaattttggaga |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
238593 |
acatgcatattttcaacaacttaaccaatggtgttaagctcactgtccactgtaaggacaaagatcatgatattggagctcaaacactaaattttggaga |
238494 |
T |
|
| Q |
208 |
atcttacaacttcgtttttaggcctggtaccgtagttgaatctaccttatacttttgtggatttagatttaatactgaatttcactactttgacgtttac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
238493 |
atcttacaacttcgtttttaggcctggtaccgtagttgaatctaccttatacttttgtggatttagatttaatactgaattttacttctttgacgtttac |
238394 |
T |
|
| Q |
308 |
gatcaaaaacgagatgannnnnnngtcggaaaagattgtcactgggaagtacatgaatcagggccatgtaggcttaatgttctggataagccaaactcaa |
407 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
238393 |
gatcaaaaacgagatgatttttttgtcggaaaagattgtcactgggaagtacatgaatcagggccatgtaggcttaatgttctggataagccaaactcaa |
238294 |
T |
|
| Q |
408 |
tagaatgcttcccatggaatccttaatgtttttatagaagggagggatctcatagaagagaataatacttttaatg |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
238293 |
tagaatgcttcccatggaatccttaatgtttttatagaagggagggatctcatagaggagaataatacttttaatg |
238218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 518 - 611
Target Start/End: Complemental strand, 238220 - 238127
Alignment:
| Q |
518 |
atgaagaataaaaatattatatcatatgattttctatagttaatagtcatatttaccattacaaagtgtgagtacgatcttcctttcttctcaa |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
238220 |
atgaagaataaaaatattatatcatatgattttctatagttaataatcatatttaccattacaaagtgtgagtacgatcttcctttcttctcaa |
238127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 555
Target Start/End: Complemental strand, 255322 - 255254
Alignment:
| Q |
487 |
atcagtgtattcctccttgaaattatatgagatgaagaataaaaatattatatcatatgattttctata |
555 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| ||||||||||||| || ||||| | ||| ||||||||| |
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|
| T |
255322 |
atcaatgtattcctccttcaaattttatgaaatgaagaataaaattaatatattacatgtttttctata |
255254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 474
Target Start/End: Complemental strand, 251095 - 250988
Alignment:
| Q |
371 |
ccatgtaggcttaatgttctggataagccaaactcaatagaatgcttcccatggaatccttaatg----tttttatagaagggagggatctcatagaaga |
466 |
Q |
| |
|
||||||||| |||||||| | | ||| || ||||| |||||||||||||||||| | ||||||| | |||||| |||||||||||||| |||| | |
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|
| T |
251095 |
ccatgtaggattaatgttttagttaatcccaactctatagaatgcttcccatggtctacttaatgtctttctttatataagggagggatctcggagaata |
250996 |
T |
|
| Q |
467 |
gaataata |
474 |
Q |
| |
|
|||||||| |
|
|
| T |
250995 |
gaataata |
250988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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