View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-14 (Length: 683)
Name: NF1441A-Insertion-14
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-14 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 8 - 683
Target Start/End: Original strand, 38626048 - 38626723
Alignment:
| Q |
8 |
agcagaacttctttcatagtgaacatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacacaccccaaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38626048 |
agcagaacttctttcatagtgaacatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacacaccccaaaaa |
38626147 |
T |
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| Q |
108 |
tcaagttgcctgtaagtataaggaggtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccccctctgnnnn |
207 |
Q |
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| T |
38626148 |
tcaagttgcctgtaagtataaggaagtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccccctctgaaaa |
38626247 |
T |
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| Q |
208 |
nnngcagtgtggtgcgagactcaaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaatt |
307 |
Q |
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| T |
38626248 |
aaagcagtgtggtgcgagactcaaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaatt |
38626347 |
T |
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| Q |
308 |
agatacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcatagga |
407 |
Q |
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| T |
38626348 |
agatacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcatagga |
38626447 |
T |
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| Q |
408 |
aatatgtggtctctacctccagacttttgccaatactttgattgccttaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacacta |
507 |
Q |
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| T |
38626448 |
aatatgtggtctctacctccagacctttgccaatactttgattgccctaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacacta |
38626547 |
T |
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| Q |
508 |
gcaggtacacgaaagaaacaacataagattaaaaaattaaagacacacagaaaattatgtgtgtgtttcgtctcaattttggatggagcaaattttattt |
607 |
Q |
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| T |
38626548 |
gcaggtacacgaaagaaacaacataagattaaaaaattaaagacacacagaaaattatgtgtgcgtttcgtctcaattttggatggagcaaattttattt |
38626647 |
T |
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| Q |
608 |
tgacatgtttggatgtttccagtaaaattgattttgcctcgggaattgattataacttgagacttgaatttgtatc |
683 |
Q |
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| T |
38626648 |
tgacatgtttggatgtttccagtaaaattgattttgcctcgggaattgattataacttgagacttgaatttgtatc |
38626723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 211 - 442
Target Start/End: Complemental strand, 34622607 - 34622376
Alignment:
| Q |
211 |
gcagtgtggtgcgagactcaaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaattaga |
310 |
Q |
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| T |
34622607 |
gcagtgtggagcgaatctcgtacggatcttgaggttcatcatctgtataagaatccacaacatgaacatacggggacaccacatctttattcaaattaga |
34622508 |
T |
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| Q |
311 |
tacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcataggaaat |
410 |
Q |
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| T |
34622507 |
catgcccttagggtagcggccaaaatccacaacaacttgaatagtatcattcaattgattacgtaggaatctaaaggcattggggtgtgtcataggaaat |
34622408 |
T |
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| Q |
411 |
atgtggtctctacctccagacttttgccaata |
442 |
Q |
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| T |
34622407 |
acatggtctctgcctttagacctctgccaata |
34622376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 604 - 647
Target Start/End: Complemental strand, 5997418 - 5997374
Alignment:
| Q |
604 |
attttgacatgtttggatg-tttccagtaaaattgattttgcctc |
647 |
Q |
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| T |
5997418 |
attttgacatgtttggatgtttttgagtaaaattgattttgcctc |
5997374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 602 - 667
Target Start/End: Complemental strand, 12444 - 12378
Alignment:
| Q |
602 |
ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
667 |
Q |
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| T |
12444 |
ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga |
12378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 667
Target Start/End: Original strand, 10898672 - 10898736
Alignment:
| Q |
604 |
attttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
667 |
Q |
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| T |
10898672 |
attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttga |
10898736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 595 - 664
Target Start/End: Original strand, 38045390 - 38045460
Alignment:
| Q |
595 |
gcaaattttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataact |
664 |
Q |
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| T |
38045390 |
gcaaaattgattttgacatgtttgaatgttctcaagtagaattgattttgcctccggtattgattttaact |
38045460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 603 - 667
Target Start/End: Original strand, 29922575 - 29922640
Alignment:
| Q |
603 |
tattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
667 |
Q |
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| T |
29922575 |
tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttga |
29922640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 605 - 667
Target Start/End: Original strand, 2171738 - 2171801
Alignment:
| Q |
605 |
ttttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
667 |
Q |
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| T |
2171738 |
ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttga |
2171801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 599 - 667
Target Start/End: Original strand, 45369107 - 45369176
Alignment:
| Q |
599 |
attttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga |
667 |
Q |
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| T |
45369107 |
atttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttga |
45369176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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