View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1441A-Insertion-16 (Length: 784)

Name: NF1441A-Insertion-16
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1441A-Insertion-16
NF1441A-Insertion-16
[»] chr3 (8 HSPs)
chr3 (302-737)||(15266913-15267348)
chr3 (411-663)||(15085905-15086159)
chr3 (8-271)||(15267350-15267615)
chr3 (153-244)||(15095067-15095158)
chr3 (238-353)||(15093772-15093891)
chr3 (441-545)||(25810566-25810670)
chr3 (499-560)||(49321959-49322020)
chr3 (241-345)||(27456480-27456585)
[»] chr5 (7 HSPs)
chr5 (438-565)||(702838-702965)
chr5 (505-566)||(28096148-28096209)
chr5 (441-544)||(32670887-32670990)
chr5 (148-190)||(19841101-19841143)
chr5 (581-663)||(28096250-28096332)
chr5 (332-373)||(32670771-32670812)
chr5 (581-633)||(32671047-32671099)
[»] chr1 (5 HSPs)
chr1 (441-552)||(5424607-5424718)
chr1 (499-561)||(15741394-15741456)
chr1 (580-663)||(15741499-15741582)
chr1 (233-328)||(5955489-5955585)
chr1 (580-649)||(5424765-5424834)
[»] chr6 (7 HSPs)
chr6 (562-663)||(31140298-31140399)
chr6 (482-557)||(26590243-26590318)
chr6 (492-567)||(31140210-31140285)
chr6 (505-565)||(2576157-2576217)
chr6 (506-565)||(26260270-26260328)
chr6 (513-557)||(24207526-24207570)
chr6 (562-663)||(26590342-26590443)
[»] scaffold0758 (2 HSPs)
scaffold0758 (446-547)||(4794-4890)
scaffold0758 (578-663)||(4939-5023)
[»] chr7 (8 HSPs)
chr7 (456-565)||(22851393-22851502)
chr7 (566-663)||(28592354-28592451)
chr7 (580-659)||(21924898-21924977)
chr7 (507-565)||(28592476-28592534)
chr7 (480-560)||(44895214-44895294)
chr7 (580-663)||(2989337-2989420)
chr7 (566-663)||(3126923-3127020)
chr7 (467-523)||(21924791-21924847)
[»] chr4 (4 HSPs)
chr4 (449-560)||(29540777-29540888)
chr4 (505-560)||(20135535-20135589)
chr4 (580-618)||(20135628-20135666)
chr4 (447-528)||(39957157-39957238)
[»] chr2 (1 HSPs)
chr2 (441-536)||(38204513-38204608)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 302 - 737
Target Start/End: Complemental strand, 15267348 - 15266913
Alignment:
Q  302 tcacgattcaggtgctattattctattatgtttgtttcattattttactgtataatgttgtcgcaaaaacatacgtctggccgtgnnnnnnnnnnnnnng 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||                   
T  15267348 tcacgattcaggtgctattattctattatgtttgtttcattattttactgtataatgttgtcgcaaaaacatacatctggccgtgaaaaatgaaaaaaa- 15267250  T
Q  402 gaaacgagtgttagaatttatctaatcagaaaaggtagtaatagataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgta 501  Q
     |||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| ||||||| |     |    
T  15267249 -aaacgagtgttagaatttatctaatcagaaaagggagcaatagataaatttgtttgtaaatgagtagaagagccttcgaataacgatggatag-----a 15267156  T
Q  502 gatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatga------taatgttgatgtaggtgttgatgaccacttcatcc 595  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||||||||||||| |||||||||||||||||||    
T  15267155 gatgaagacaatcttgaacaatctaatgaaaatttgaatgatgacaatctcatcaatgacaatgataatgttgatgtaggcgttgatgaccacttcatcc 15267056  T
Q  596 ctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatttnnnnnnnggtttgttatgtaattgaatctca 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||    
T  15267055 ctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatttaaaaaaaggtttgttaggtaattgaatctca 15266956  T
Q  696 ca-tttctatagacggacattctatgcatttttcatattctta 737  Q
    || ||||||||||||| ||||||||||||||||||||||||||    
T  15266955 cattttctatagacgggcattctatgcatttttcatattctta 15266913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 411 - 663
Target Start/End: Complemental strand, 15086159 - 15085905
Alignment:
Q  411 gttagaatttatctaatcagaaaaggtagtaatagataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagat 510  Q
    ||||||||||||||||| | |||||| || |||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||    
T  15086159 gttagaatttatctaataa-aaaagggagcaatagataaatttgtttgtaaatgagtagaagaaccttcgagtaatgatggattagccgtagatgaagat 15086061  T
Q  511 aatcttgaacaatctaatgaaaatttgaatgatgacattctcat------caatgataatgttgatgtaggtgttgatgaccacttcatccctcctttat 604  Q
    ||||||||||||||||||||||||||||||||||||| || |||      ||||||||||||||||||||| ||    ||||||||||||||| ||||||    
T  15086060 aatcttgaacaatctaatgaaaatttgaatgatgacaatcccatcaatgacaatgataatgttgatgtaggcgt---cgaccacttcatcccttctttat 15085964  T
Q  605 atatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatt 663  Q
    ||||||||| | |||||||||||| || ||||||||||||||||| | || ||||||||    
T  15085963 atatctatgattctaaaaatttggataatcatgatgctaaaaccatatacgttttaatt 15085905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 15267615 - 15267350
Alignment:
Q  8 tatatgagccagagtgaagagggtgacattcctaaaccctaaaaattaagtccaaaattgggggaaaaa-gggggtccattaagagnnnnnnnngtactt 106  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||         ||||||    
T  15267615 tatatgagacagagtgaagaggatgacattcctagaccctaaaaattaagtccaatatttggggaaaaaagggggtccattaaga-aaaaaaaagtactt 15267517  T
Q  107 aaagacgtggttctttattgaatcatttataagttgtcacatgatgttattaaa-ggaatttcaaatccctaattttcaacaacaatattgtagcaacgt 205  Q
    ||||| || | ||||||||| ||||||||||| || |||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  15267516 aaagatgtagctctttattgtatcatttataatttatcacgtgatgttattaaaaggaagttcaaatccctaattttcaacaacaatattgtagcaacgt 15267417  T
Q  206 atnnnnnnntagaaaggcgcacaatttaaaggcaaagttgcagtggcaactt-aagagaaagaagaa 271  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15267416 ataaaaaaatagaaaggcgcacaatttaaaggcaaagttgcagtggcaacttaaagagaaagaagaa 15267350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 15095158 - 15095067
Alignment:
Q  153 ttattaaaggaatttcaaatccctaattttcaacaacaatattgtagcaacgtatnnnnnnntagaaaggcgcacaatttaaaggcaaagtt 244  Q
    |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||       ||||||||| ||||||| |||| |||||||    
T  15095158 ttattaaagggagttcaaatccctaattttcaacaataatattgtagcaacgtataaaaaaatagaaaggcacacaattgaaagacaaagtt 15095067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 15093891 - 15093772
Alignment:
Q  238 caaagttgcagtggcaacttaa-gagaaagaagaaaaattgttacaacaacagcttcat-ca--gagatcacgattcaggtgctattattctattatgtt 333  Q
    ||||||||  |||||||||||| ||||||||||||||| ||||  | || | ||||||| ||  | ||||||||||| |||| |||||||||||||||||    
T  15093891 caaagttgatgtggcaacttaaagagaaagaagaaaaagtgttctagcaccggcttcatacaaggggatcacgattctggtgttattattctattatgtt 15093792  T
Q  334 tgtttcattattttactgta 353  Q
    ||||||||||||||| ||||    
T  15093791 tgtttcattattttattgta 15093772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 545
Target Start/End: Original strand, 25810566 - 25810670
Alignment:
Q  441 aatagataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaat 540  Q
    |||||||||||||| ||||||   ||||| ||||  || |||||||| ||||||| ||||||| |||||| || ||||||||| |||||||||||||||     
T  25810566 aatagataaatttgtttgtaacctagtagtagagtttttgaataatgttggattgaccgtagaagaagatgattttgaacaatttaatgaaaatttgaaa 25810665  T
Q  541 gatga 545  Q
    |||||    
T  25810666 gatga 25810670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 560
Target Start/End: Original strand, 49321959 - 49322020
Alignment:
Q  499 gtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatga 560  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  49321959 gtagaagaagataaccttgaacattctaatgaaaatttgaatgatgacaatctcatcgatga 49322020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 27456480 - 27456585
Alignment:
Q  241 agttgcagtggcaacttaaga-gaaagaagaaaaattgttacaacaacagcttcatcagagatcacgattcaggtgctattattctattatgtttgtttc 339  Q
    |||||||| | |||||||| | |||||||||||||  ||| ||||||||||||||||   |||||| | || |||| ||||||| ||||   ||||||||    
T  27456480 agttgcagcgacaacttaaaaagaaagaagaaaaagggttccaacaacagcttcatcgacgatcaccaatccggtgttattattgtatttgttttgtttc 27456579  T
Q  340 attatt 345  Q
    ||||||    
T  27456580 attatt 27456585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 438 - 565
Target Start/End: Original strand, 702838 - 702965
Alignment:
Q  438 agtaatagataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttg 537  Q
    |||| |||||||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||| |    
T  702838 agtagtagataaatttgtttgtaaacgagtaaaagagtcttcgaataatgatggattgaccatagaagaaaataatcttgaacaatctaatgaaaattcg 702937  T
Q  538 aatgatgacattctcatcaatgataatg 565  Q
    |||||||||| |||||||||||| ||||    
T  702938 aatgatgacaatctcatcaatgacaatg 702965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 505 - 566
Target Start/End: Original strand, 28096148 - 28096209
Alignment:
Q  505 gaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatgt 566  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||    
T  28096148 gaagataatcttgaacaatctaatgaaaattggaatgatgacaatcccatcaataataatgt 28096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 441 - 544
Target Start/End: Original strand, 32670887 - 32670990
Alignment:
Q  441 aatagataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaat 540  Q
    |||| ||||||||| ||||||| || || |||||||| | ||||||  |||||||||| |||| ||| ||||| || | ||||||| | |||||||||||    
T  32670887 aataaataaatttgtttgtaaacgaatataagagcctgcaaataattgtggattggccatagaagaatataattttaagcaatctattaaaaatttgaat 32670986  T
Q  541 gatg 544  Q
    ||||    
T  32670987 gatg 32670990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 19841101 - 19841143
Alignment:
Q  148 tgatgttattaaaggaatttcaaatccctaattttcaacaaca 190  Q
    ||||||||||||||| | |||||||||||||||||||||||||    
T  19841101 tgatgttattaaagggagttcaaatccctaattttcaacaaca 19841143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 581 - 663
Target Start/End: Original strand, 28096250 - 28096332
Alignment:
Q  581 atgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatt 663  Q
    |||||||||||||| ||| |||| || |||||| || || ||||  |||||||| |||||||||||| || ||||||||||||    
T  28096250 atgaccacttcatctctcatttagatgtctatgatcttagaaatcggggtattcttgatgctaaaactagggacattttaatt 28096332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 32670771 - 32670812
Alignment:
Q  332 tttgtttcattattttactgtataatgttgtcgcaaaaacat 373  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  32670771 tttgtttcattattttactgtataatattgtcgccaaaacat 32670812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 581 - 633
Target Start/End: Original strand, 32671047 - 32671099
Alignment:
Q  581 atgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtatt 633  Q
    ||||||||||||||||||||||| |||| |||| ||| ||||||| |||||||    
T  32671047 atgaccacttcatccctcctttagatatttatgatccaaaaaattggggtatt 32671099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 441 - 552
Target Start/End: Original strand, 5424607 - 5424718
Alignment:
Q  441 aatagataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaat 540  Q
    |||| ||||||||| ||||||||||||| || || ||||  |||| ||||||||| |||| || |||||| |||||||||||||||||||| ||||||||    
T  5424607 aataaataaatttgtttgtaaatgagtataaaagtcttcacataaggatggattgaccgttgaagaagatgatcttgaacaatctaatgaacatttgaat 5424706  T
Q  541 gatgacattctc 552  Q
    ||| ||| ||||    
T  5424707 gattacaatctc 5424718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 499 - 561
Target Start/End: Original strand, 15741394 - 15741456
Alignment:
Q  499 gtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgat 561  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  15741394 gtagaagaagataatcttgaacaatctaatgaaaatttgaatgatgacaatctcattaatgat 15741456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 580 - 663
Target Start/End: Original strand, 15741499 - 15741582
Alignment:
Q  580 gatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatt 663  Q
    |||||| ||||||||||||||||| ||||||||| || || ||| | || ||||| |||||||||||||| |||||||||||||    
T  15741499 gatgactacttcatccctcctttagatatctatgatcttagaaactaggatattcttgatgctaaaaccaaagacattttaatt 15741582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 5955489 - 5955585
Alignment:
Q  233 aaaggcaaagttgcagtggcaacttaa-gagaaagaagaaaaattgttacaacaacagcttcatcagagatcacgattcaggtgctattattctatt 328  Q
    |||| |||||||| || |||||||||| |||||||||||||||| |||  | | ||| |||||||   ||| |||||||| ||||||||||||||||    
T  5955489 aaagacaaagttgtagcggcaacttaaagagaaagaagaaaaatggttctagcgacaacttcatcgtcgatgacgattcatgtgctattattctatt 5955585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 649
Target Start/End: Original strand, 5424765 - 5424834
Alignment:
Q  580 gatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaacca 649  Q
    |||||||||||||||||||||||| | ||||||| ||||| ||||  || || |  ||||||||||||||    
T  5424765 gatgaccacttcatccctcctttagaaatctatgatcctataaatagggataattttgatgctaaaacca 5424834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 562 - 663
Target Start/End: Original strand, 31140298 - 31140399
Alignment:
Q  562 aatgttgatgtaggtgttgatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaa 661  Q
    |||||| |||||||  | |||||||||||||||  ||||||| ||||||||| ||||| ||||| | |||||| |||||||||||||| |||||||||||    
T  31140298 aatgttaatgtaggcatagatgaccacttcatctatcctttagatatctatgatcctagaaattggagtattcttgatgctaaaaccatagacattttaa 31140397  T
Q  662 tt 663  Q
    ||    
T  31140398 tt 31140399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 482 - 557
Target Start/End: Original strand, 26590243 - 26590318
Alignment:
Q  482 ataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaa 557  Q
    |||| ||| |||||| |||| | ||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  26590243 ataacgattgattggtcgtaaaagaagataatcttgaacaatctaatgaaaattggaatgatgaaaatctcatcaa 26590318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 492 - 567
Target Start/End: Original strand, 31140210 - 31140285
Alignment:
Q  492 attggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatgtt 567  Q
    ||||| |||||| |||||| |||| |||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  31140210 attggtcgtagaagaagatgatctcgaacaatccaatgaaaattggaatgatgacaatcttatcaatgataatgtt 31140285  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 565
Target Start/End: Complemental strand, 2576217 - 2576157
Alignment:
Q  505 gaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatg 565  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||  |||||||| ||||    
T  2576217 gaagataatcttgaacaatctaatgaaaattggaatgatggcaatcatatcaatgaaaatg 2576157  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 506 - 565
Target Start/End: Original strand, 26260270 - 26260328
Alignment:
Q  506 aagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatg 565  Q
    |||||||||| |||||||| ||| ||| |||||||||||||| |||||||||||||||||    
T  26260270 aagataatct-gaacaatcgaataaaattttgaatgatgacaatctcatcaatgataatg 26260328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 513 - 557
Target Start/End: Original strand, 24207526 - 24207570
Alignment:
Q  513 tcttgaacaatctaatgaaaatttgaatgatgacattctcatcaa 557  Q
    |||||||||||||||| |||||||||| ||||||| |||||||||    
T  24207526 tcttgaacaatctaataaaaatttgaacgatgacaatctcatcaa 24207570  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 663
Target Start/End: Original strand, 26590342 - 26590443
Alignment:
Q  562 aatgttgatgtaggtgttgatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaa 661  Q
    |||||| |||||||  | ||||||||||||||   ||||||| ||||  ||| ||||| ||||| |||||||| |||||||| | ||||| |||| ||||    
T  26590342 aatgttaatgtaggcatcgatgaccacttcatttatcctttagatatacatgatcctagaaattggggtattcttgatgctatagccagatacatattaa 26590441  T
Q  662 tt 663  Q
    ||    
T  26590442 tt 26590443  T

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Target: scaffold0758 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 446 - 547
Target Start/End: Original strand, 4794 - 4890
Alignment:
Q  446 ataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatga 545  Q
    ||||||||| | ||||| |||||||||||||||  ||||||||||||      ||| | |||||||||||||||||||||||||||||||| ||||||||    
T  4794 ataaatttgttagtaaacgagtagaagagccttaaaataatgatggaa-----gtaaaagaagataatcttgaacaatctaatgaaaatttaaatgatga 4888  T

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Target: scaffold0758; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 663
Target Start/End: Original strand, 4939 - 5023
Alignment:
Q  578 ttgatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatt 663  Q
    ||||||||||||| ||||||||| |||||||||||| ||||| ||| |||| ||||  | ||||||||| || | |||||||||||    
T  4939 ttgatgaccactttatccctcctctatatatctatgatcctagaaa-ttggatattttttatgctaaaatcaaacacattttaatt 5023  T

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Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 456 - 565
Target Start/End: Complemental strand, 22851502 - 22851393
Alignment:
Q  456 ttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatc 555  Q
    |||||||  ||||||| || |||||||||| |||||||||| |||||| ||| ||||| | |||||||||||||||||||| || ||||||  || ||||    
T  22851502 ttgtaaacaagtagaaaagtcttcgaataacgatggattggtcgtagaagaaaataatgtcgaacaatctaatgaaaatttaaaagatgacgatcccatc 22851403  T
Q  556 aatgataatg 565  Q
    ||||| ||||    
T  22851402 aatgacaatg 22851393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 566 - 663
Target Start/End: Complemental strand, 28592451 - 28592354
Alignment:
Q  566 ttgatgtaggtgttgatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatt 663  Q
    ||||||||||| |  ||||||||||||||| ||||||| |||| |||| |||||||||||  |||| || ||||| |||||||| |||||||||||||    
T  28592451 ttgatgtaggtatcaatgaccacttcatccatcctttagatatgtatgatcctaaaaattgaggtaatcttgatgttaaaaccaaagacattttaatt 28592354  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 580 - 659
Target Start/End: Original strand, 21924898 - 21924977
Alignment:
Q  580 gatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacatttt 659  Q
    |||||||||||||||||||||||| ||||||||||||||| || ||  |||| || ||||||||||| || |||||||||    
T  21924898 gatgaccacttcatccctcctttagatatctatggtcctagaatttgaggtaatcttgatgctaaaatcaaagacatttt 21924977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 28592534 - 28592476
Alignment:
Q  507 agataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatg 565  Q
    ||||||||||||| ||||||||||||||||||||||||||| |  ||||||||| ||||    
T  28592534 agataatcttgaaaaatctaatgaaaatttgaatgatgacaattccatcaatgacaatg 28592476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 480 - 560
Target Start/End: Original strand, 44895214 - 44895294
Alignment:
Q  480 gaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatga 560  Q
    ||||||||||||||  | | ||||  |||||| ||||||||||| |||||||| |||||||||||| | ||||||||||||    
T  44895214 gaataatgatggatatgtcatagaaaaagatactcttgaacaatataatgaaattttgaatgatgataatctcatcaatga 44895294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 580 - 663
Target Start/End: Complemental strand, 2989420 - 2989337
Alignment:
Q  580 gatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatt 663  Q
    ||||||||||||||| |||||||| |||| |||| ||||| ||||| |||||||| |||| |||||   |||||| ||||||||    
T  2989420 gatgaccacttcatctctcctttagatatttatgatcctagaaattagggtattcttgatactaaagttagagacgttttaatt 2989337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 663
Target Start/End: Original strand, 3126923 - 3127020
Alignment:
Q  566 ttgatgtaggtgttgatgaccacttcatccctcctttatatatctatggtcctaaaaatttgggtattcatgatgctaaaaccagagacattttaatt 663  Q
    ||||||||||  | ||||||||||||||| |||||||| || | |||| ||||| ||||| || ||||| |||||||||||  ||| |||| ||||||    
T  3126923 ttgatgtaggcatcgatgaccacttcatctctcctttagatttatatgatcctagaaattgggatattcttgatgctaaaaggagacacatgttaatt 3127020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 21924791 - 21924847
Alignment:
Q  467 tagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaat 523  Q
    |||||||| |||||||||||| |||||||| | |||| ||||||||||| |||||||    
T  21924791 tagaagagtcttcgaataatggtggattggtcatagaagaagataatctcgaacaat 21924847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 449 - 560
Target Start/End: Complemental strand, 29540888 - 29540777
Alignment:
Q  449 aatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacat 548  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||||  ||||||  ||| |||| || || | ||||||||||| ||||| |||||||     
T  29540888 aatttgtttgtaaacgagtagaagagccttctaataatgatggattgatcgtagaaaaagttaatattaaatattctaatgaaaaattgaacgatgacaa 29540789  T
Q  549 tctcatcaatga 560  Q
    || |||| ||||    
T  29540788 tcccatccatga 29540777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 560
Target Start/End: Original strand, 20135535 - 20135589
Alignment:
Q  505 gaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatga 560  Q
    ||||||||||||||| |||||||| |||||||||||||||||| | |||| |||||    
T  20135535 gaagataatcttgaagaatctaat-aaaatttgaatgatgacaatttcattaatga 20135589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 618
Target Start/End: Original strand, 20135628 - 20135666
Alignment:
Q  580 gatgaccacttcatccctcctttatatatctatggtcct 618  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  20135628 gatgaccacttcatccctcctttagatatctatgatcct 20135666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 528
Target Start/End: Original strand, 39957157 - 39957238
Alignment:
Q  447 taaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaat 528  Q
    |||||||| || ||||  ||||||||||| ||| |||||||||| | ||  |||| |  |||||||||||||||||||||||    
T  39957157 taaatttgtttctaaagaagtagaagagcattcaaataatgatgaaatgatcgtaaaaaaagataatcttgaacaatctaat 39957238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 441 - 536
Target Start/End: Original strand, 38204513 - 38204608
Alignment:
Q  441 aatagataaatttgattgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaattt 536  Q
    |||| ||||||||| ||||||| |||||||||||| ||| | || |||||||||||  ||||| ||| |||||||| |||||| |||| |||||||    
T  38204513 aataaataaatttgtttgtaaacgagtagaagagcattcaagtagtgatggattggttgtagaagaaaataatcttaaacaatttaattaaaattt 38204608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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