View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1441A-Insertion-17 (Length: 686)
Name: NF1441A-Insertion-17
Description: NF1441A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1441A-Insertion-17 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 400 - 685
Target Start/End: Complemental strand, 46814279 - 46813994
Alignment:
| Q |
400 |
ggtaggaggaattcttttccactatgaaaaagtcccatttttctggacaagtgcctgtttcgctttctttaacaagttagaataaaaaataataagaaag |
499 |
Q |
| |
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||||||||||||||||| |||| ||| |||||||||||||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
46814279 |
ggtaggaggaattctttcccaccatgggaaagtcccatttttatggacaggtggctgttttactttctttaacaagttagaataaaaaataataaaaaag |
46814180 |
T |
|
| Q |
500 |
caattctcttattttaatgagtgtatttgaccattatgccctttttatcttcttgttttttcggcaacatagatctgacattttgtttcataacaatgcc |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46814179 |
caattctcttattttaatgagtgtatttgaccattatgccctttttatcttcttgttttttcggcaacatagatctgacattttgtttcacaacaatgcc |
46814080 |
T |
|
| Q |
600 |
tcagacacagtcatctttgttcatgatctagttatcatctagcacaacacaatatcaaaatgtgttctagatttattttctattat |
685 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46814079 |
tcagacacagtcatctttgttcatgatctagttatcatctagcacaacacaatatcaaaatgtgttctagatttattttctattat |
46813994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 384 - 685
Target Start/End: Complemental strand, 50355044 - 50354748
Alignment:
| Q |
384 |
ggtggcatttaaggtcggtaggaggaattcttttccactatgaaaaagtcccatttttctggacaagtgcctgtttcgctttctttaacaagttagaata |
483 |
Q |
| |
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||||||||||| ||| ||||||||||||||||| |||| ||| ||||| |||||||| ||| || |||||| |||||||||||||||||||||| |
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| T |
50355044 |
ggtggcatttagggtgggtaggaggaattctttcccaccatgggaaagttccatttttatgg-----tggctgttttactttctttaacaagttagaata |
50354950 |
T |
|
| Q |
484 |
aaaaataataagaaagcaattctcttattttaatgagtgtatttgaccattatgccctttttatcttcttgttttttcggcaacatagatctgacatttt |
583 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50354949 |
aaaaataataaaaaagcaattctcttattttaatgagtgtatttgaccattatgccctttttatcttcttgttttttcggcaacatagatctgacatttt |
50354850 |
T |
|
| Q |
584 |
gtttcataacaatgcctcagacacagtcatctttgttcatgatctagttatcatctagcacaacacaatatcaaaatgtgttctagatttattttctatt |
683 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50354849 |
gtttcacaacaatgcctcagacacagtcatctttgttcatgatctagttatcatctagcacaacacaatatcaaaatgtgttctagatttattttctatt |
50354750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 51976264 - 51976313
Alignment:
| Q |
384 |
ggtggcatttaaggtcggtaggaggaattcttttccactatgaaaaagtc |
433 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| ||| ||||||| |
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|
| T |
51976264 |
ggtggcatttagggtgggtaggaggaattcttttccaccatggaaaagtc |
51976313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 24976767 - 24976730
Alignment:
| Q |
384 |
ggtggcatttaaggtcggtaggaggaattcttttccac |
421 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||| |
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| T |
24976767 |
ggtggcatttagggtgggtaggaggaattcttttccac |
24976730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 43458107 - 43457960
Alignment:
| Q |
135 |
gttacacgtacctatctgtaccttcaccaaccaataaaatatgttttagaatttttgtttaaaaaataaataaattcaatgacaaccggattaactgcca |
234 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
43458107 |
gttacacgtacctatttgtaccttcaccaaccaataaaatatgttttagaatttttgtttaaaaaataaataaattcaatgacaaccggattaaccgtca |
43458008 |
T |
|
| Q |
235 |
tgtggcagcaaaaaggagactttctcatggtgggaaaaatctctactg |
282 |
Q |
| |
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||| |||||||||||||||||| |||| ||| |||||||||||||| |
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| T |
43458007 |
ggtgacagcaaaaaggagacttttccatgatggaaaaaatctctactg |
43457960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 30264367 - 30264448
Alignment:
| Q |
302 |
catgtaaggatatgataagcagctagtttcccacaaactgcatgcatatagtgacaagtgctctatactatattataattta |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
30264367 |
catgtaaggatatgataagcagctagtttcccacaaacagcatgcatatagtgacaagtactctatagtatattataattta |
30264448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 43589211 - 43589169
Alignment:
| Q |
383 |
aggtggcatttaaggtcggtaggaggaattcttttccactatg |
425 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |||||||| |
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| T |
43589211 |
aggtggcatttagggtgggtaggaggaattctttcccactatg |
43589169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 433
Target Start/End: Original strand, 42638147 - 42638197
Alignment:
| Q |
383 |
aggtggcatttaaggtcggtaggaggaattcttttccactatgaaaaagtc |
433 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |||| |||||| |
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| T |
42638147 |
aggtggcatttagggtgggtaggaggaattcttttccaccatgagaaagtc |
42638197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 38135977 - 38135891
Alignment:
| Q |
406 |
aggaattcttttccactatgaaaaagtcccatttttctggacaagtgcctgtttcgctttctttaacaagttagaataaaaaataat |
492 |
Q |
| |
|
|||||| ||||||||| ||| ||| || ||||||||||| || ||| ||||||| |||| ||||||| ||||||||||||||||| |
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| T |
38135977 |
aggaatacttttccaccatgggaaactcacatttttctgggcaggtggctgtttcactttgtttaacatattagaataaaaaataat |
38135891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 20681720 - 20681763
Alignment:
| Q |
382 |
taggtggcatttaaggtcggtaggaggaattcttttccactatg |
425 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||||||| |
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|
| T |
20681720 |
taggtggcatttagggtgggtaggaggaattctttcccactatg |
20681763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 31911539 - 31911587
Alignment:
| Q |
384 |
ggtggcatttaaggtcggtaggaggaattcttttccactatgaaaaagt |
432 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||| |||||| |
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| T |
31911539 |
ggtggcatttaaggtgggtaggaggaagacttttccaccatggaaaagt |
31911587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 441
Target Start/End: Complemental strand, 29382889 - 29382831
Alignment:
| Q |
383 |
aggtggcatttaaggtcggtaggaggaattcttttccactatgaaaaagtcccattttt |
441 |
Q |
| |
|
|||||||||||| ||| ||||||||||| ||||||||| |||| ||||| |||||||| |
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|
| T |
29382889 |
aggtggcatttagggtgggtaggaggaagacttttccaccatgacaaagttccattttt |
29382831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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